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Cluster: HRGMv2_1534_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1534_17 HRGMv2_1534_17_3 2847 4352 + GH77
CAZyme HRGMv2_1534_17 HRGMv2_1534_17_4 4481 6748 + GT35
TC HRGMv2_1534_17 HRGMv2_1534_17_5 7205 8404 - 3.A.1.1.22
TC HRGMv2_1534_17 HRGMv2_1534_17_6 8473 9312 - 3.A.1.1.45
TC HRGMv2_1534_17 HRGMv2_1534_17_7 9312 10166 - 3.A.1.1.45
TC HRGMv2_1534_17 HRGMv2_1534_17_8 10254 11570 - 3.A.1.1.45
TF HRGMv2_1534_17 HRGMv2_1534_17_9 11877 12596 - GntR
TC HRGMv2_1534_17 HRGMv2_1534_17_10 12821 15271 + 4.A.1.1.8
Gene ID: HRGMv2_1534_17_3
Type: CAZyme
Location: 2847 - 4352 (+)
Gene ID: HRGMv2_1534_17_4
Type: CAZyme
Location: 4481 - 6748 (+)
Gene ID: HRGMv2_1534_17_5
Type: TC
Location: 7205 - 8404 (-)
Gene ID: HRGMv2_1534_17_6
Type: TC
Location: 8473 - 9312 (-)
Gene ID: HRGMv2_1534_17_7
Type: TC
Location: 9312 - 10166 (-)
Gene ID: HRGMv2_1534_17_8
Type: TC
Location: 10254 - 11570 (-)
Gene ID: HRGMv2_1534_17_9
Type: TF
Location: 11877 - 12596 (-)
Gene ID: HRGMv2_1534_17_10
Type: TC
Location: 12821 - 15271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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