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Cluster: HRGMv2_1534_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1534_66 HRGMv2_1534_66_5 3963 5132 - CE9
STP HRGMv2_1534_66 HRGMv2_1534_66_6 5248 6414 - SIS | SIS
TF HRGMv2_1534_66 HRGMv2_1534_66_7 6526 7260 - GntR
TC HRGMv2_1534_66 HRGMv2_1534_66_8 7911 8393 - 4.A.6.1.3
pfam HRGMv2_1534_66 HRGMv2_1534_66_9 8891 9364 - DUF386
CAZyme HRGMv2_1534_66 HRGMv2_1534_66_10 9397 10566 - CE9
TF HRGMv2_1534_66 HRGMv2_1534_66_11 10710 11441 - GntR
TC HRGMv2_1534_66 HRGMv2_1534_66_12 11674 12249 - 4.A.1.1.7
Gene ID: HRGMv2_1534_66_5
Type: CAZyme
Location: 3963 - 5132 (-)
Gene ID: HRGMv2_1534_66_6
Type: STP
Location: 5248 - 6414 (-)
Gene ID: HRGMv2_1534_66_7
Type: TF
Location: 6526 - 7260 (-)
Gene ID: HRGMv2_1534_66_8
Type: TC
Location: 7911 - 8393 (-)
Gene ID: HRGMv2_1534_66_9
Type: pfam
Location: 8891 - 9364 (-)
Gene ID: HRGMv2_1534_66_10
Type: CAZyme
Location: 9397 - 10566 (-)
Gene ID: HRGMv2_1534_66_11
Type: TF
Location: 10710 - 11441 (-)
Gene ID: HRGMv2_1534_66_12
Type: TC
Location: 11674 - 12249 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1534_66_11 vegetarian > vegan 3.40162 0.02017

🧭 Explore Read Mapping of CGC

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