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Cluster: HRGMv2_1533_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1533_4 HRGMv2_1533_4_55 48191 49612 - GH1
TC HRGMv2_1533_4 HRGMv2_1533_4_56 49688 51466 - 4.A.3.1.1
TF HRGMv2_1533_4 HRGMv2_1533_4_57 51743 52753 + LacI
TC HRGMv2_1533_4 HRGMv2_1533_4_58 53086 54846 - 4.A.3.1.1
CAZyme HRGMv2_1533_4 HRGMv2_1533_4_59 55021 56463 - GH1
TF HRGMv2_1533_4 HRGMv2_1533_4_60 56805 57842 + LacI
CAZyme HRGMv2_1533_4 HRGMv2_1533_4_61 58111 59550 - GH1
TC HRGMv2_1533_4 HRGMv2_1533_4_62 59617 61392 - 4.A.3.1.1
TF HRGMv2_1533_4 HRGMv2_1533_4_63 61750 62754 + LacI
TC HRGMv2_1533_4 HRGMv2_1533_4_64 62968 63306 + 4.A.3.1.2
Gene ID: HRGMv2_1533_4_55
Type: CAZyme
Location: 48191 - 49612 (-)
Gene ID: HRGMv2_1533_4_56
Type: TC
Location: 49688 - 51466 (-)
Gene ID: HRGMv2_1533_4_57
Type: TF
Location: 51743 - 52753 (+)
Gene ID: HRGMv2_1533_4_58
Type: TC
Location: 53086 - 54846 (-)
Gene ID: HRGMv2_1533_4_59
Type: CAZyme
Location: 55021 - 56463 (-)
Gene ID: HRGMv2_1533_4_60
Type: TF
Location: 56805 - 57842 (+)
Gene ID: HRGMv2_1533_4_61
Type: CAZyme
Location: 58111 - 59550 (-)
Gene ID: HRGMv2_1533_4_62
Type: TC
Location: 59617 - 61392 (-)
Gene ID: HRGMv2_1533_4_63
Type: TF
Location: 61750 - 62754 (+)
Gene ID: HRGMv2_1533_4_64
Type: TC
Location: 62968 - 63306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1533_4_60 vegetarian > omnivore 1.05331 0.02242

🧭 Explore Read Mapping of CGC

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