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Cluster: HRGMv2_1533_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1533_4 HRGMv2_1533_4_25 25280 25723 + 4.A.6.1.16
pfam HRGMv2_1533_4 HRGMv2_1533_4_26 25723 26004 + YajC
TC HRGMv2_1533_4 HRGMv2_1533_4_27 26041 26523 + 4.A.6.1.4
TC HRGMv2_1533_4 HRGMv2_1533_4_28 26614 27414 + 4.A.6.1.4
TC HRGMv2_1533_4 HRGMv2_1533_4_29 27404 28486 + 4.A.6.1.4
TF HRGMv2_1533_4 HRGMv2_1533_4_30 28671 29402 + GntR
STP HRGMv2_1533_4 HRGMv2_1533_4_31 29517 30683 + SIS | SIS
CAZyme HRGMv2_1533_4 HRGMv2_1533_4_32 30802 31971 + CE9
Gene ID: HRGMv2_1533_4_25
Type: TC
Location: 25280 - 25723 (+)
Gene ID: HRGMv2_1533_4_26
Type: pfam
Location: 25723 - 26004 (+)
Gene ID: HRGMv2_1533_4_27
Type: TC
Location: 26041 - 26523 (+)
Gene ID: HRGMv2_1533_4_28
Type: TC
Location: 26614 - 27414 (+)
Gene ID: HRGMv2_1533_4_29
Type: TC
Location: 27404 - 28486 (+)
Gene ID: HRGMv2_1533_4_30
Type: TF
Location: 28671 - 29402 (+)
Gene ID: HRGMv2_1533_4_31
Type: STP
Location: 29517 - 30683 (+)
Gene ID: HRGMv2_1533_4_32
Type: CAZyme
Location: 30802 - 31971 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1533_4_26 vegan > omnivore 1.04536 0.00701

🧭 Explore Read Mapping of CGC

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