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Cluster: HRGMv2_1533_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1533_2 HRGMv2_1533_2_1 168 962 - 3.A.1.34.1
TC HRGMv2_1533_2 HRGMv2_1533_2_2 955 1878 - 3.A.1.34.1
TC HRGMv2_1533_2 HRGMv2_1533_2_3 2083 3063 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1533_2 HRGMv2_1533_2_4 3223 4011 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1533_2 HRGMv2_1533_2_5 4269 5672 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1533_2 HRGMv2_1533_2_6 5854 6417 - 4.A.1.2.6
peptidase HRGMv2_1533_2 HRGMv2_1533_2_7 6662 7561 + S09.UPW
NULL(UNKNOWN) HRGMv2_1533_2 HRGMv2_1533_2_8 7609 7929 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1533_2 HRGMv2_1533_2_9 8051 10411 + 9.A.8.1.6
TC HRGMv2_1533_2 HRGMv2_1533_2_10 10532 11728 + 2.A.1.2.18
CAZyme HRGMv2_1533_2 HRGMv2_1533_2_11 11911 13287 + GH13_20
Gene ID: HRGMv2_1533_2_1
Type: TC
Location: 168 - 962 (-)
Gene ID: HRGMv2_1533_2_2
Type: TC
Location: 955 - 1878 (-)
Gene ID: HRGMv2_1533_2_3
Type: TC
Location: 2083 - 3063 (-)
Gene ID: HRGMv2_1533_2_4
Type:
Location: 3223 - 4011 (-)
Gene ID: HRGMv2_1533_2_5
Type: pfam
Location: 4269 - 5672 (-)
Gene ID: HRGMv2_1533_2_6
Type: TC
Location: 5854 - 6417 (-)
Gene ID: HRGMv2_1533_2_7
Type: peptidase
Location: 6662 - 7561 (+)
Gene ID: HRGMv2_1533_2_8
Type:
Location: 7609 - 7929 (+)
Gene ID: HRGMv2_1533_2_9
Type: TC
Location: 8051 - 10411 (+)
Gene ID: HRGMv2_1533_2_10
Type: TC
Location: 10532 - 11728 (+)
Gene ID: HRGMv2_1533_2_11
Type: CAZyme
Location: 11911 - 13287 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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