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Cluster: HRGMv2_1533_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1533_20 HRGMv2_1533_20_17 16533 17459 - CE7
TC HRGMv2_1533_20 HRGMv2_1533_20_18 17591 18418 - 3.A.1.5.27
TC HRGMv2_1533_20 HRGMv2_1533_20_19 18419 20434 - 3.A.1.5.25
TC HRGMv2_1533_20 HRGMv2_1533_20_20 20438 21394 - 3.A.1.5.38
TC HRGMv2_1533_20 HRGMv2_1533_20_21 21552 23165 - 3.A.1.5.27
pfam HRGMv2_1533_20 HRGMv2_1533_20_22 23531 25471 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1533_20 HRGMv2_1533_20_23 25478 27160 - 2.A.66.4.4
Gene ID: HRGMv2_1533_20_17
Type: CAZyme
Location: 16533 - 17459 (-)
Gene ID: HRGMv2_1533_20_18
Type: TC
Location: 17591 - 18418 (-)
Gene ID: HRGMv2_1533_20_19
Type: TC
Location: 18419 - 20434 (-)
Gene ID: HRGMv2_1533_20_20
Type: TC
Location: 20438 - 21394 (-)
Gene ID: HRGMv2_1533_20_21
Type: TC
Location: 21552 - 23165 (-)
Gene ID: HRGMv2_1533_20_22
Type: pfam
Location: 23531 - 25471 (-)
Gene ID: HRGMv2_1533_20_23
Type: TC
Location: 25478 - 27160 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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