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Cluster: HRGMv2_1532_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1532_16 HRGMv2_1532_16_3 1392 2318 - CE7
TC HRGMv2_1532_16 HRGMv2_1532_16_4 2450 3277 - 3.A.1.5.27
TC HRGMv2_1532_16 HRGMv2_1532_16_5 3278 5293 - 3.A.1.5.25
TC HRGMv2_1532_16 HRGMv2_1532_16_6 5297 6253 - 3.A.1.5.38
TC HRGMv2_1532_16 HRGMv2_1532_16_7 6411 8024 - 3.A.1.5.27
pfam HRGMv2_1532_16 HRGMv2_1532_16_8 8390 10330 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1532_16 HRGMv2_1532_16_9 10337 12019 - 2.A.66.4.4
Gene ID: HRGMv2_1532_16_3
Type: CAZyme
Location: 1392 - 2318 (-)
Gene ID: HRGMv2_1532_16_4
Type: TC
Location: 2450 - 3277 (-)
Gene ID: HRGMv2_1532_16_5
Type: TC
Location: 3278 - 5293 (-)
Gene ID: HRGMv2_1532_16_6
Type: TC
Location: 5297 - 6253 (-)
Gene ID: HRGMv2_1532_16_7
Type: TC
Location: 6411 - 8024 (-)
Gene ID: HRGMv2_1532_16_8
Type: pfam
Location: 8390 - 10330 (-)
Gene ID: HRGMv2_1532_16_9
Type: TC
Location: 10337 - 12019 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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