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Cluster: HRGMv2_1532_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1532_10 HRGMv2_1532_10_15 13946 15115 - CE9
STP HRGMv2_1532_10 HRGMv2_1532_10_16 15234 16400 - SIS | SIS
TF HRGMv2_1532_10 HRGMv2_1532_10_17 16515 17246 - GntR
TC HRGMv2_1532_10 HRGMv2_1532_10_18 17431 18513 - 4.A.6.1.4
TC HRGMv2_1532_10 HRGMv2_1532_10_19 18503 19303 - 4.A.6.1.4
TC HRGMv2_1532_10 HRGMv2_1532_10_20 19394 19876 - 4.A.6.1.4
pfam HRGMv2_1532_10 HRGMv2_1532_10_21 19913 20194 - YajC
TC HRGMv2_1532_10 HRGMv2_1532_10_22 20194 20637 - 4.A.6.1.16
Gene ID: HRGMv2_1532_10_15
Type: CAZyme
Location: 13946 - 15115 (-)
Gene ID: HRGMv2_1532_10_16
Type: STP
Location: 15234 - 16400 (-)
Gene ID: HRGMv2_1532_10_17
Type: TF
Location: 16515 - 17246 (-)
Gene ID: HRGMv2_1532_10_18
Type: TC
Location: 17431 - 18513 (-)
Gene ID: HRGMv2_1532_10_19
Type: TC
Location: 18503 - 19303 (-)
Gene ID: HRGMv2_1532_10_20
Type: TC
Location: 19394 - 19876 (-)
Gene ID: HRGMv2_1532_10_21
Type: pfam
Location: 19913 - 20194 (-)
Gene ID: HRGMv2_1532_10_22
Type: TC
Location: 20194 - 20637 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1532_10_21 vegan > omnivore 1.07990 0.00701

🧭 Explore Read Mapping of CGC

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