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Cluster: HRGMv2_1531_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1531_23 HRGMv2_1531_23_2 1072 2454 - GH4
TC HRGMv2_1531_23 HRGMv2_1531_23_3 2458 4074 - 4.A.1.1.3
pfam HRGMv2_1531_23 HRGMv2_1531_23_4 4174 5040 - PRD | PRD | CAT_RBD
TC HRGMv2_1531_23 HRGMv2_1531_23_5 5047 5559 - 4.A.1.2.5
STP HRGMv2_1531_23 HRGMv2_1531_23_6 5840 6601 - Fer4
TC HRGMv2_1531_23 HRGMv2_1531_23_7 7223 9472 - 1.I.1.1.3
STP HRGMv2_1531_23 HRGMv2_1531_23_8 9984 10946 + FHA
STP HRGMv2_1531_23 HRGMv2_1531_23_9 11118 13202 + Pkinase
TC HRGMv2_1531_23 HRGMv2_1531_23_10 13614 15956 + 3.A.3.5.15
Gene ID: HRGMv2_1531_23_2
Type: CAZyme
Location: 1072 - 2454 (-)
Gene ID: HRGMv2_1531_23_3
Type: TC
Location: 2458 - 4074 (-)
Gene ID: HRGMv2_1531_23_4
Type: pfam
Location: 4174 - 5040 (-)
Gene ID: HRGMv2_1531_23_5
Type: TC
Location: 5047 - 5559 (-)
Gene ID: HRGMv2_1531_23_6
Type: STP
Location: 5840 - 6601 (-)
Gene ID: HRGMv2_1531_23_7
Type: TC
Location: 7223 - 9472 (-)
Gene ID: HRGMv2_1531_23_8
Type: STP
Location: 9984 - 10946 (+)
Gene ID: HRGMv2_1531_23_9
Type: STP
Location: 11118 - 13202 (+)
Gene ID: HRGMv2_1531_23_10
Type: TC
Location: 13614 - 15956 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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