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Cluster: HRGMv2_1530_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1530_15 HRGMv2_1530_15_43 39451 40872 - GH1
TC HRGMv2_1530_15 HRGMv2_1530_15_44 40949 42727 - 4.A.3.1.1
TF HRGMv2_1530_15 HRGMv2_1530_15_45 43003 44013 + LacI
CAZyme HRGMv2_1530_15 HRGMv2_1530_15_46 44462 45901 - GH1
TC HRGMv2_1530_15 HRGMv2_1530_15_47 45968 47743 - 4.A.3.1.1
TF HRGMv2_1530_15 HRGMv2_1530_15_48 48100 49104 + LacI
TC HRGMv2_1530_15 HRGMv2_1530_15_49 49319 49657 + 4.A.3.1.2
Gene ID: HRGMv2_1530_15_43
Type: CAZyme
Location: 39451 - 40872 (-)
Gene ID: HRGMv2_1530_15_44
Type: TC
Location: 40949 - 42727 (-)
Gene ID: HRGMv2_1530_15_45
Type: TF
Location: 43003 - 44013 (+)
Gene ID: HRGMv2_1530_15_46
Type: CAZyme
Location: 44462 - 45901 (-)
Gene ID: HRGMv2_1530_15_47
Type: TC
Location: 45968 - 47743 (-)
Gene ID: HRGMv2_1530_15_48
Type: TF
Location: 48100 - 49104 (+)
Gene ID: HRGMv2_1530_15_49
Type: TC
Location: 49319 - 49657 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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