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Cluster: HRGMv2_1530_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1530_15 HRGMv2_1530_15_26 25150 25593 + 4.A.6.1.16
pfam HRGMv2_1530_15 HRGMv2_1530_15_27 25593 25874 + YajC
TC HRGMv2_1530_15 HRGMv2_1530_15_28 25911 26393 + 4.A.6.1.4
TC HRGMv2_1530_15 HRGMv2_1530_15_29 26484 27284 + 4.A.6.1.4
TC HRGMv2_1530_15 HRGMv2_1530_15_30 27274 28356 + 4.A.6.1.4
TF HRGMv2_1530_15 HRGMv2_1530_15_31 28541 29272 + GntR
STP HRGMv2_1530_15 HRGMv2_1530_15_32 29387 30553 + SIS | SIS
CAZyme HRGMv2_1530_15 HRGMv2_1530_15_33 30672 31841 + CE9
Gene ID: HRGMv2_1530_15_26
Type: TC
Location: 25150 - 25593 (+)
Gene ID: HRGMv2_1530_15_27
Type: pfam
Location: 25593 - 25874 (+)
Gene ID: HRGMv2_1530_15_28
Type: TC
Location: 25911 - 26393 (+)
Gene ID: HRGMv2_1530_15_29
Type: TC
Location: 26484 - 27284 (+)
Gene ID: HRGMv2_1530_15_30
Type: TC
Location: 27274 - 28356 (+)
Gene ID: HRGMv2_1530_15_31
Type: TF
Location: 28541 - 29272 (+)
Gene ID: HRGMv2_1530_15_32
Type: STP
Location: 29387 - 30553 (+)
Gene ID: HRGMv2_1530_15_33
Type: CAZyme
Location: 30672 - 31841 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1530_15_27 vegan > omnivore 1.07333 0.00701

🧭 Explore Read Mapping of CGC

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