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Cluster: HRGMv2_1530_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1530_12 HRGMv2_1530_12_7 4840 6216 - GH13_20
TC HRGMv2_1530_12 HRGMv2_1530_12_8 6399 7595 - 2.A.1.2.18
TC HRGMv2_1530_12 HRGMv2_1530_12_9 7717 10077 - 9.A.8.1.6
peptidase HRGMv2_1530_12 HRGMv2_1530_12_10 10333 11235 - S09.UPW
TC HRGMv2_1530_12 HRGMv2_1530_12_11 11480 12043 + 4.A.1.2.6
pfam HRGMv2_1530_12 HRGMv2_1530_12_12 12225 13628 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1530_12 HRGMv2_1530_12_13 13878 14663 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1530_12 HRGMv2_1530_12_14 14824 15804 + 3.A.1.34.1
TC HRGMv2_1530_12 HRGMv2_1530_12_15 16009 16932 + 3.A.1.34.1
TC HRGMv2_1530_12 HRGMv2_1530_12_16 16925 17719 + 3.A.1.34.1
pfam HRGMv2_1530_12 HRGMv2_1530_12_17 17792 19822 + Metallophos | 5_nucleotid_C
TC HRGMv2_1530_12 HRGMv2_1530_12_18 19951 20718 + 1.A.23.4.10
pfam HRGMv2_1530_12 HRGMv2_1530_12_19 20812 22728 + Bmp
pfam HRGMv2_1530_12 HRGMv2_1530_12_20 22725 23435 + Metallophos | Metallophos_2
TC HRGMv2_1530_12 HRGMv2_1530_12_21 23562 24269 - 1.C.82.1.1
Gene ID: HRGMv2_1530_12_7
Type: CAZyme
Location: 4840 - 6216 (-)
Gene ID: HRGMv2_1530_12_8
Type: TC
Location: 6399 - 7595 (-)
Gene ID: HRGMv2_1530_12_9
Type: TC
Location: 7717 - 10077 (-)
Gene ID: HRGMv2_1530_12_10
Type: peptidase
Location: 10333 - 11235 (-)
Gene ID: HRGMv2_1530_12_11
Type: TC
Location: 11480 - 12043 (+)
Gene ID: HRGMv2_1530_12_12
Type: pfam
Location: 12225 - 13628 (+)
Gene ID: HRGMv2_1530_12_13
Type:
Location: 13878 - 14663 (+)
Gene ID: HRGMv2_1530_12_14
Type: TC
Location: 14824 - 15804 (+)
Gene ID: HRGMv2_1530_12_15
Type: TC
Location: 16009 - 16932 (+)
Gene ID: HRGMv2_1530_12_16
Type: TC
Location: 16925 - 17719 (+)
Gene ID: HRGMv2_1530_12_17
Type: pfam
Location: 17792 - 19822 (+)
Gene ID: HRGMv2_1530_12_18
Type: TC
Location: 19951 - 20718 (+)
Gene ID: HRGMv2_1530_12_19
Type: pfam
Location: 20812 - 22728 (+)
Gene ID: HRGMv2_1530_12_20
Type: pfam
Location: 22725 - 23435 (+)
Gene ID: HRGMv2_1530_12_21
Type: TC
Location: 23562 - 24269 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1530_12_17 vegan > omnivore 1.83124 0.00701
HRGMv2_1530_12_17 vegetarian > omnivore 1.40631 0.01557

🧭 Explore Read Mapping of CGC

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