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Cluster: HRGMv2_1529_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1529_7 HRGMv2_1529_7_4 1023 3365 - 3.A.3.5.15
STP HRGMv2_1529_7 HRGMv2_1529_7_5 3699 5783 - Pkinase
STP HRGMv2_1529_7 HRGMv2_1529_7_6 5955 6917 - FHA
TC HRGMv2_1529_7 HRGMv2_1529_7_7 7517 8281 + 1.I.1.1.3
TC HRGMv2_1529_7 HRGMv2_1529_7_8 8288 9766 + 1.I.1.1.3
TC HRGMv2_1529_7 HRGMv2_1529_7_9 10131 10643 + 4.A.1.2.5
pfam HRGMv2_1529_7 HRGMv2_1529_7_10 10650 11516 + PRD | PRD | CAT_RBD
TC HRGMv2_1529_7 HRGMv2_1529_7_11 11616 13232 + 4.A.1.1.3
CAZyme HRGMv2_1529_7 HRGMv2_1529_7_12 13236 14618 + GH4
Gene ID: HRGMv2_1529_7_4
Type: TC
Location: 1023 - 3365 (-)
Gene ID: HRGMv2_1529_7_5
Type: STP
Location: 3699 - 5783 (-)
Gene ID: HRGMv2_1529_7_6
Type: STP
Location: 5955 - 6917 (-)
Gene ID: HRGMv2_1529_7_7
Type: TC
Location: 7517 - 8281 (+)
Gene ID: HRGMv2_1529_7_8
Type: TC
Location: 8288 - 9766 (+)
Gene ID: HRGMv2_1529_7_9
Type: TC
Location: 10131 - 10643 (+)
Gene ID: HRGMv2_1529_7_10
Type: pfam
Location: 10650 - 11516 (+)
Gene ID: HRGMv2_1529_7_11
Type: TC
Location: 11616 - 13232 (+)
Gene ID: HRGMv2_1529_7_12
Type: CAZyme
Location: 13236 - 14618 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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