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Cluster: HRGMv2_1528_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1528_12 HRGMv2_1528_12_6 6415 8259 - GH2
TC HRGMv2_1528_12 HRGMv2_1528_12_7 8365 9783 - 4.A.1.2.2
TF HRGMv2_1528_12 HRGMv2_1528_12_8 10151 11164 + HTH_AraC
pfam HRGMv2_1528_12 HRGMv2_1528_12_9 11460 12020 - UDG
CAZyme HRGMv2_1528_12 HRGMv2_1528_12_10 12024 13400 - GH13_20
TC HRGMv2_1528_12 HRGMv2_1528_12_11 13583 14779 - 2.A.1.2.18
TC HRGMv2_1528_12 HRGMv2_1528_12_12 14901 17261 - 9.A.8.1.6
peptidase HRGMv2_1528_12 HRGMv2_1528_12_13 17517 18419 - S09.UPW
TC HRGMv2_1528_12 HRGMv2_1528_12_14 18664 19227 + 4.A.1.2.6
pfam HRGMv2_1528_12 HRGMv2_1528_12_15 19409 20812 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1528_12 HRGMv2_1528_12_16 21062 21847 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1528_12 HRGMv2_1528_12_17 22008 22988 + 3.A.1.34.1
TC HRGMv2_1528_12 HRGMv2_1528_12_18 23193 24116 + 3.A.1.34.1
TC HRGMv2_1528_12 HRGMv2_1528_12_19 24109 24903 + 3.A.1.34.1
pfam HRGMv2_1528_12 HRGMv2_1528_12_20 25050 26162 + DEDD_Tnp_IS110 | Transposase_20
pfam HRGMv2_1528_12 HRGMv2_1528_12_21 26535 28565 + Metallophos | 5_nucleotid_C
TC HRGMv2_1528_12 HRGMv2_1528_12_22 28694 29461 + 1.A.23.4.10
pfam HRGMv2_1528_12 HRGMv2_1528_12_23 29556 31472 + Bmp
pfam HRGMv2_1528_12 HRGMv2_1528_12_24 31469 32179 + Metallophos | Metallophos_2
TC HRGMv2_1528_12 HRGMv2_1528_12_25 32307 33014 - 1.C.82.1.1
Gene ID: HRGMv2_1528_12_6
Type: CAZyme
Location: 6415 - 8259 (-)
Gene ID: HRGMv2_1528_12_7
Type: TC
Location: 8365 - 9783 (-)
Gene ID: HRGMv2_1528_12_8
Type: TF
Location: 10151 - 11164 (+)
Gene ID: HRGMv2_1528_12_9
Type: pfam
Location: 11460 - 12020 (-)
Gene ID: HRGMv2_1528_12_10
Type: CAZyme
Location: 12024 - 13400 (-)
Gene ID: HRGMv2_1528_12_11
Type: TC
Location: 13583 - 14779 (-)
Gene ID: HRGMv2_1528_12_12
Type: TC
Location: 14901 - 17261 (-)
Gene ID: HRGMv2_1528_12_13
Type: peptidase
Location: 17517 - 18419 (-)
Gene ID: HRGMv2_1528_12_14
Type: TC
Location: 18664 - 19227 (+)
Gene ID: HRGMv2_1528_12_15
Type: pfam
Location: 19409 - 20812 (+)
Gene ID: HRGMv2_1528_12_16
Type:
Location: 21062 - 21847 (+)
Gene ID: HRGMv2_1528_12_17
Type: TC
Location: 22008 - 22988 (+)
Gene ID: HRGMv2_1528_12_18
Type: TC
Location: 23193 - 24116 (+)
Gene ID: HRGMv2_1528_12_19
Type: TC
Location: 24109 - 24903 (+)
Gene ID: HRGMv2_1528_12_20
Type: pfam
Location: 25050 - 26162 (+)
Gene ID: HRGMv2_1528_12_21
Type: pfam
Location: 26535 - 28565 (+)
Gene ID: HRGMv2_1528_12_22
Type: TC
Location: 28694 - 29461 (+)
Gene ID: HRGMv2_1528_12_23
Type: pfam
Location: 29556 - 31472 (+)
Gene ID: HRGMv2_1528_12_24
Type: pfam
Location: 31469 - 32179 (+)
Gene ID: HRGMv2_1528_12_25
Type: TC
Location: 32307 - 33014 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1528_12_20 vegan > omnivore 1.32233 0.00701
HRGMv2_1528_12_20 vegetarian > omnivore 1.28203 0.01736
HRGMv2_1528_12_21 vegan > omnivore 1.85557 0.00701
HRGMv2_1528_12_21 vegetarian > omnivore 1.38097 0.01285

🧭 Explore Read Mapping of CGC

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