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Cluster: HRGMv2_1528_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1528_4 HRGMv2_1528_4_20 20289 21458 - CE9
STP HRGMv2_1528_4 HRGMv2_1528_4_21 21576 22742 - SIS | SIS
TF HRGMv2_1528_4 HRGMv2_1528_4_22 22857 23588 - GntR
TC HRGMv2_1528_4 HRGMv2_1528_4_23 23773 24855 - 4.A.6.1.4
TC HRGMv2_1528_4 HRGMv2_1528_4_24 24845 25645 - 4.A.6.1.4
TC HRGMv2_1528_4 HRGMv2_1528_4_25 25733 26215 - 4.A.6.1.4
pfam HRGMv2_1528_4 HRGMv2_1528_4_26 26252 26533 - YajC
TC HRGMv2_1528_4 HRGMv2_1528_4_27 26533 26976 - 4.A.6.1.16
Gene ID: HRGMv2_1528_4_20
Type: CAZyme
Location: 20289 - 21458 (-)
Gene ID: HRGMv2_1528_4_21
Type: STP
Location: 21576 - 22742 (-)
Gene ID: HRGMv2_1528_4_22
Type: TF
Location: 22857 - 23588 (-)
Gene ID: HRGMv2_1528_4_23
Type: TC
Location: 23773 - 24855 (-)
Gene ID: HRGMv2_1528_4_24
Type: TC
Location: 24845 - 25645 (-)
Gene ID: HRGMv2_1528_4_25
Type: TC
Location: 25733 - 26215 (-)
Gene ID: HRGMv2_1528_4_26
Type: pfam
Location: 26252 - 26533 (-)
Gene ID: HRGMv2_1528_4_27
Type: TC
Location: 26533 - 26976 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1528_4_26 vegan > omnivore 1.06653 0.00701

🧭 Explore Read Mapping of CGC

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