Cluster: HRGMv2_1528_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1528
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1528_1 | HRGMv2_1528_1_4 | 7975 | 9063 | - | 3.D.1.4.2 |
| pfam | HRGMv2_1528_1 | HRGMv2_1528_1_5 | 9069 | 9782 | - | Complex1_30kDa |
| TC | HRGMv2_1528_1 | HRGMv2_1528_1_6 | 9782 | 10375 | - | 3.D.1.4.2 |
| TC | HRGMv2_1528_1 | HRGMv2_1528_1_7 | 10388 | 13270 | - | 3.D.1.4.2 |
| TF | HRGMv2_1528_1 | HRGMv2_1528_1_8 | 13558 | 13953 | - | 0039939 |
| STP | HRGMv2_1528_1 | HRGMv2_1528_1_9 | 14403 | 16433 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_1528_1 | HRGMv2_1528_1_10 | 17220 | 18647 | - | GH140 |
| CAZyme | HRGMv2_1528_1 | HRGMv2_1528_1_11 | 18717 | 19961 | - | GH1 |
| pfam | HRGMv2_1528_1 | HRGMv2_1528_1_12 | 20054 | 20809 | - | YdjC |
| TF | HRGMv2_1528_1 | HRGMv2_1528_1_13 | 21040 | 22938 | + | HTH_11 |
| CAZyme | HRGMv2_1528_1 | HRGMv2_1528_1_14 | 22990 | 24366 | + | GH1 |
| pfam | HRGMv2_1528_1 | HRGMv2_1528_1_15 | 24463 | 24822 | + | PTS_IIA |
| TC | HRGMv2_1528_1 | HRGMv2_1528_1_16 | 25077 | 26339 | - | 4.A.3.2.2 |
| TC | HRGMv2_1528_1 | HRGMv2_1528_1_17 | 26354 | 26659 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1528_1_4
Type: TC
Location: 7975 - 9063 (-)
Type: TC
Location: 7975 - 9063 (-)
Gene ID: HRGMv2_1528_1_5
Type: pfam
Location: 9069 - 9782 (-)
Type: pfam
Location: 9069 - 9782 (-)
Gene ID: HRGMv2_1528_1_6
Type: TC
Location: 9782 - 10375 (-)
Type: TC
Location: 9782 - 10375 (-)
Gene ID: HRGMv2_1528_1_7
Type: TC
Location: 10388 - 13270 (-)
Type: TC
Location: 10388 - 13270 (-)
Gene ID: HRGMv2_1528_1_8
Type: TF
Location: 13558 - 13953 (-)
Type: TF
Location: 13558 - 13953 (-)
Gene ID: HRGMv2_1528_1_9
Type: STP
Location: 14403 - 16433 (-)
Type: STP
Location: 14403 - 16433 (-)
Gene ID: HRGMv2_1528_1_10
Type: CAZyme
Location: 17220 - 18647 (-)
Type: CAZyme
Location: 17220 - 18647 (-)
Gene ID: HRGMv2_1528_1_11
Type: CAZyme
Location: 18717 - 19961 (-)
Type: CAZyme
Location: 18717 - 19961 (-)
Gene ID: HRGMv2_1528_1_12
Type: pfam
Location: 20054 - 20809 (-)
Type: pfam
Location: 20054 - 20809 (-)
Gene ID: HRGMv2_1528_1_13
Type: TF
Location: 21040 - 22938 (+)
Type: TF
Location: 21040 - 22938 (+)
Gene ID: HRGMv2_1528_1_14
Type: CAZyme
Location: 22990 - 24366 (+)
Type: CAZyme
Location: 22990 - 24366 (+)
Gene ID: HRGMv2_1528_1_15
Type: pfam
Location: 24463 - 24822 (+)
Type: pfam
Location: 24463 - 24822 (+)
Gene ID: HRGMv2_1528_1_16
Type: TC
Location: 25077 - 26339 (-)
Type: TC
Location: 25077 - 26339 (-)
Gene ID: HRGMv2_1528_1_17
Type: TC
Location: 26354 - 26659 (-)
Type: TC
Location: 26354 - 26659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.