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Cluster: HRGMv2_1527_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1527_14 HRGMv2_1527_14_1 637 1080 + 4.A.6.1.16
pfam HRGMv2_1527_14 HRGMv2_1527_14_2 1080 1361 + YajC
TC HRGMv2_1527_14 HRGMv2_1527_14_3 1398 1880 + 4.A.6.1.4
TC HRGMv2_1527_14 HRGMv2_1527_14_4 1971 2771 + 4.A.6.1.4
TC HRGMv2_1527_14 HRGMv2_1527_14_5 2761 3843 + 4.A.6.1.4
TF HRGMv2_1527_14 HRGMv2_1527_14_6 4028 4759 + GntR
STP HRGMv2_1527_14 HRGMv2_1527_14_7 4874 6040 + SIS | SIS
CAZyme HRGMv2_1527_14 HRGMv2_1527_14_8 6159 7328 + CE9
Gene ID: HRGMv2_1527_14_1
Type: TC
Location: 637 - 1080 (+)
Gene ID: HRGMv2_1527_14_2
Type: pfam
Location: 1080 - 1361 (+)
Gene ID: HRGMv2_1527_14_3
Type: TC
Location: 1398 - 1880 (+)
Gene ID: HRGMv2_1527_14_4
Type: TC
Location: 1971 - 2771 (+)
Gene ID: HRGMv2_1527_14_5
Type: TC
Location: 2761 - 3843 (+)
Gene ID: HRGMv2_1527_14_6
Type: TF
Location: 4028 - 4759 (+)
Gene ID: HRGMv2_1527_14_7
Type: STP
Location: 4874 - 6040 (+)
Gene ID: HRGMv2_1527_14_8
Type: CAZyme
Location: 6159 - 7328 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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