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Cluster: HRGMv2_1525_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1525_1 HRGMv2_1525_1_215 212232 214076 - GH2
TC HRGMv2_1525_1 HRGMv2_1525_1_216 214182 215600 - 4.A.1.2.2
TF HRGMv2_1525_1 HRGMv2_1525_1_217 215968 216981 + HTH_AraC
pfam HRGMv2_1525_1 HRGMv2_1525_1_218 217279 217839 - UDG
CAZyme HRGMv2_1525_1 HRGMv2_1525_1_219 217843 219219 - GH13_20
TC HRGMv2_1525_1 HRGMv2_1525_1_220 219402 220598 - 2.A.1.2.18
TC HRGMv2_1525_1 HRGMv2_1525_1_221 220720 223080 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1525_1 HRGMv2_1525_1_222 223202 223522 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1525_1 HRGMv2_1525_1_223 223570 224469 - S09.UPW
TC HRGMv2_1525_1 HRGMv2_1525_1_224 224714 225277 + 4.A.1.2.6
pfam HRGMv2_1525_1 HRGMv2_1525_1_225 225459 226862 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1525_1 HRGMv2_1525_1_226 227112 227897 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1525_1 HRGMv2_1525_1_227 228058 229038 + 3.A.1.34.1
TC HRGMv2_1525_1 HRGMv2_1525_1_228 229243 230166 + 3.A.1.34.1
TC HRGMv2_1525_1 HRGMv2_1525_1_229 230159 230953 + 3.A.1.34.1
pfam HRGMv2_1525_1 HRGMv2_1525_1_230 231026 233056 + Metallophos | 5_nucleotid_C
TC HRGMv2_1525_1 HRGMv2_1525_1_231 233185 233952 + 1.A.23.4.10
pfam HRGMv2_1525_1 HRGMv2_1525_1_232 234046 235962 + Bmp
pfam HRGMv2_1525_1 HRGMv2_1525_1_233 235959 236669 + Metallophos | Metallophos_2
TC HRGMv2_1525_1 HRGMv2_1525_1_234 236797 237504 - 1.C.82.1.1
Gene ID: HRGMv2_1525_1_215
Type: CAZyme
Location: 212232 - 214076 (-)
Gene ID: HRGMv2_1525_1_216
Type: TC
Location: 214182 - 215600 (-)
Gene ID: HRGMv2_1525_1_217
Type: TF
Location: 215968 - 216981 (+)
Gene ID: HRGMv2_1525_1_218
Type: pfam
Location: 217279 - 217839 (-)
Gene ID: HRGMv2_1525_1_219
Type: CAZyme
Location: 217843 - 219219 (-)
Gene ID: HRGMv2_1525_1_220
Type: TC
Location: 219402 - 220598 (-)
Gene ID: HRGMv2_1525_1_221
Type: TC
Location: 220720 - 223080 (-)
Gene ID: HRGMv2_1525_1_222
Type:
Location: 223202 - 223522 (-)
Gene ID: HRGMv2_1525_1_223
Type: peptidase
Location: 223570 - 224469 (-)
Gene ID: HRGMv2_1525_1_224
Type: TC
Location: 224714 - 225277 (+)
Gene ID: HRGMv2_1525_1_225
Type: pfam
Location: 225459 - 226862 (+)
Gene ID: HRGMv2_1525_1_226
Type:
Location: 227112 - 227897 (+)
Gene ID: HRGMv2_1525_1_227
Type: TC
Location: 228058 - 229038 (+)
Gene ID: HRGMv2_1525_1_228
Type: TC
Location: 229243 - 230166 (+)
Gene ID: HRGMv2_1525_1_229
Type: TC
Location: 230159 - 230953 (+)
Gene ID: HRGMv2_1525_1_230
Type: pfam
Location: 231026 - 233056 (+)
Gene ID: HRGMv2_1525_1_231
Type: TC
Location: 233185 - 233952 (+)
Gene ID: HRGMv2_1525_1_232
Type: pfam
Location: 234046 - 235962 (+)
Gene ID: HRGMv2_1525_1_233
Type: pfam
Location: 235959 - 236669 (+)
Gene ID: HRGMv2_1525_1_234
Type: TC
Location: 236797 - 237504 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1525_1_230 vegan > omnivore 2.13640 0.01033
HRGMv2_1525_1_230 vegetarian > omnivore 1.53181 0.01054

🧭 Explore Read Mapping of CGC

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