Cluster: HRGMv2_1525_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1525
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1525_23 | HRGMv2_1525_23_6 | 4742 | 5080 | - | 4.A.3.1.2 |
| TF | HRGMv2_1525_23 | HRGMv2_1525_23_7 | 5295 | 6299 | - | LacI |
| TC | HRGMv2_1525_23 | HRGMv2_1525_23_8 | 6656 | 8428 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1525_23 | HRGMv2_1525_23_9 | 8621 | 10060 | + | GH1 |
| TF | HRGMv2_1525_23 | HRGMv2_1525_23_10 | 10555 | 11613 | - | LacI |
| TC | HRGMv2_1525_23 | HRGMv2_1525_23_11 | 11842 | 13620 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1525_23 | HRGMv2_1525_23_12 | 13696 | 15117 | + | GH1 |
Gene ID: HRGMv2_1525_23_6
Type: TC
Location: 4742 - 5080 (-)
Type: TC
Location: 4742 - 5080 (-)
Gene ID: HRGMv2_1525_23_7
Type: TF
Location: 5295 - 6299 (-)
Type: TF
Location: 5295 - 6299 (-)
Gene ID: HRGMv2_1525_23_8
Type: TC
Location: 6656 - 8428 (+)
Type: TC
Location: 6656 - 8428 (+)
Gene ID: HRGMv2_1525_23_9
Type: CAZyme
Location: 8621 - 10060 (+)
Type: CAZyme
Location: 8621 - 10060 (+)
Gene ID: HRGMv2_1525_23_10
Type: TF
Location: 10555 - 11613 (-)
Type: TF
Location: 10555 - 11613 (-)
Gene ID: HRGMv2_1525_23_11
Type: TC
Location: 11842 - 13620 (+)
Type: TC
Location: 11842 - 13620 (+)
Gene ID: HRGMv2_1525_23_12
Type: CAZyme
Location: 13696 - 15117 (+)
Type: CAZyme
Location: 13696 - 15117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.