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Cluster: HRGMv2_1525_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1525_1 HRGMv2_1525_1_15 17583 18965 - GH4
TC HRGMv2_1525_1 HRGMv2_1525_1_16 18969 20585 - 4.A.1.1.3
pfam HRGMv2_1525_1 HRGMv2_1525_1_17 20685 21551 - PRD | PRD | CAT_RBD
TC HRGMv2_1525_1 HRGMv2_1525_1_18 21558 22070 - 4.A.1.2.5
STP HRGMv2_1525_1 HRGMv2_1525_1_19 22351 23112 - Fer4
TC HRGMv2_1525_1 HRGMv2_1525_1_20 23734 25983 - 1.I.1.1.3
STP HRGMv2_1525_1 HRGMv2_1525_1_21 26495 27457 + FHA
STP HRGMv2_1525_1 HRGMv2_1525_1_22 27629 29713 + Pkinase
TC HRGMv2_1525_1 HRGMv2_1525_1_23 30046 32388 + 3.A.3.5.15
Gene ID: HRGMv2_1525_1_15
Type: CAZyme
Location: 17583 - 18965 (-)
Gene ID: HRGMv2_1525_1_16
Type: TC
Location: 18969 - 20585 (-)
Gene ID: HRGMv2_1525_1_17
Type: pfam
Location: 20685 - 21551 (-)
Gene ID: HRGMv2_1525_1_18
Type: TC
Location: 21558 - 22070 (-)
Gene ID: HRGMv2_1525_1_19
Type: STP
Location: 22351 - 23112 (-)
Gene ID: HRGMv2_1525_1_20
Type: TC
Location: 23734 - 25983 (-)
Gene ID: HRGMv2_1525_1_21
Type: STP
Location: 26495 - 27457 (+)
Gene ID: HRGMv2_1525_1_22
Type: STP
Location: 27629 - 29713 (+)
Gene ID: HRGMv2_1525_1_23
Type: TC
Location: 30046 - 32388 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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