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Cluster: HRGMv2_1524_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1524_25 HRGMv2_1524_25_7 4290 5459 - CE9
STP HRGMv2_1524_25 HRGMv2_1524_25_8 5577 6743 - SIS | SIS
TF HRGMv2_1524_25 HRGMv2_1524_25_9 6858 7589 - GntR
TC HRGMv2_1524_25 HRGMv2_1524_25_10 7774 8856 - 4.A.6.1.4
TC HRGMv2_1524_25 HRGMv2_1524_25_11 8846 9646 - 4.A.6.1.4
TC HRGMv2_1524_25 HRGMv2_1524_25_12 9737 10219 - 4.A.6.1.4
pfam HRGMv2_1524_25 HRGMv2_1524_25_13 10256 10537 - YajC
TC HRGMv2_1524_25 HRGMv2_1524_25_14 10537 10980 - 4.A.6.1.16
Gene ID: HRGMv2_1524_25_7
Type: CAZyme
Location: 4290 - 5459 (-)
Gene ID: HRGMv2_1524_25_8
Type: STP
Location: 5577 - 6743 (-)
Gene ID: HRGMv2_1524_25_9
Type: TF
Location: 6858 - 7589 (-)
Gene ID: HRGMv2_1524_25_10
Type: TC
Location: 7774 - 8856 (-)
Gene ID: HRGMv2_1524_25_11
Type: TC
Location: 8846 - 9646 (-)
Gene ID: HRGMv2_1524_25_12
Type: TC
Location: 9737 - 10219 (-)
Gene ID: HRGMv2_1524_25_13
Type: pfam
Location: 10256 - 10537 (-)
Gene ID: HRGMv2_1524_25_14
Type: TC
Location: 10537 - 10980 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1524_25_13 vegan > omnivore 1.11271 0.00455

🧭 Explore Read Mapping of CGC

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