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Cluster: HRGMv2_1524_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1524_23 HRGMv2_1524_23_17 16632 17558 - CE7
TC HRGMv2_1524_23 HRGMv2_1524_23_18 17690 18517 - 3.A.1.5.27
TC HRGMv2_1524_23 HRGMv2_1524_23_19 18518 20533 - 3.A.1.5.25
TC HRGMv2_1524_23 HRGMv2_1524_23_20 20537 21493 - 3.A.1.5.38
TC HRGMv2_1524_23 HRGMv2_1524_23_21 21651 23264 - 3.A.1.5.27
pfam HRGMv2_1524_23 HRGMv2_1524_23_22 23630 25570 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1524_23 HRGMv2_1524_23_23 25577 27259 - 2.A.66.4.4
Gene ID: HRGMv2_1524_23_17
Type: CAZyme
Location: 16632 - 17558 (-)
Gene ID: HRGMv2_1524_23_18
Type: TC
Location: 17690 - 18517 (-)
Gene ID: HRGMv2_1524_23_19
Type: TC
Location: 18518 - 20533 (-)
Gene ID: HRGMv2_1524_23_20
Type: TC
Location: 20537 - 21493 (-)
Gene ID: HRGMv2_1524_23_21
Type: TC
Location: 21651 - 23264 (-)
Gene ID: HRGMv2_1524_23_22
Type: pfam
Location: 23630 - 25570 (-)
Gene ID: HRGMv2_1524_23_23
Type: TC
Location: 25577 - 27259 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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