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Cluster: HRGMv2_1524_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1524_22 HRGMv2_1524_22_6 4205 5626 - GH1
TC HRGMv2_1524_22 HRGMv2_1524_22_7 5702 7480 - 4.A.3.1.1
TF HRGMv2_1524_22 HRGMv2_1524_22_8 7756 8766 + LacI
TC HRGMv2_1524_22 HRGMv2_1524_22_9 9100 10860 - 4.A.3.1.1
CAZyme HRGMv2_1524_22 HRGMv2_1524_22_10 11037 12479 - GH1
TF HRGMv2_1524_22 HRGMv2_1524_22_11 12821 13858 + LacI
CAZyme HRGMv2_1524_22 HRGMv2_1524_22_12 14120 15559 - GH1
TC HRGMv2_1524_22 HRGMv2_1524_22_13 15626 17401 - 4.A.3.1.1
TF HRGMv2_1524_22 HRGMv2_1524_22_14 17758 18762 + LacI
TC HRGMv2_1524_22 HRGMv2_1524_22_15 18977 19315 + 4.A.3.1.2
Gene ID: HRGMv2_1524_22_6
Type: CAZyme
Location: 4205 - 5626 (-)
Gene ID: HRGMv2_1524_22_7
Type: TC
Location: 5702 - 7480 (-)
Gene ID: HRGMv2_1524_22_8
Type: TF
Location: 7756 - 8766 (+)
Gene ID: HRGMv2_1524_22_9
Type: TC
Location: 9100 - 10860 (-)
Gene ID: HRGMv2_1524_22_10
Type: CAZyme
Location: 11037 - 12479 (-)
Gene ID: HRGMv2_1524_22_11
Type: TF
Location: 12821 - 13858 (+)
Gene ID: HRGMv2_1524_22_12
Type: CAZyme
Location: 14120 - 15559 (-)
Gene ID: HRGMv2_1524_22_13
Type: TC
Location: 15626 - 17401 (-)
Gene ID: HRGMv2_1524_22_14
Type: TF
Location: 17758 - 18762 (+)
Gene ID: HRGMv2_1524_22_15
Type: TC
Location: 18977 - 19315 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1524_22_11 vegetarian > omnivore 1.03017 0.01714

🧭 Explore Read Mapping of CGC

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