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Cluster: HRGMv2_1524_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1524_14 HRGMv2_1524_14_29 32106 33482 - GH13_20
TC HRGMv2_1524_14 HRGMv2_1524_14_30 33636 34832 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1524_14 HRGMv2_1524_14_31 35007 35759 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1524_14 HRGMv2_1524_14_32 35925 37298 - GH4
TF HRGMv2_1524_14 HRGMv2_1524_14_33 37473 38225 + HTH_6
TC HRGMv2_1524_14 HRGMv2_1524_14_34 38288 39952 - 4.A.1.1.3
TC HRGMv2_1524_14 HRGMv2_1524_14_35 40267 42627 - 9.A.8.1.6
peptidase HRGMv2_1524_14 HRGMv2_1524_14_36 43040 43942 - S09.UPW
TC HRGMv2_1524_14 HRGMv2_1524_14_37 44187 44750 + 4.A.1.2.6
pfam HRGMv2_1524_14 HRGMv2_1524_14_38 44932 46335 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1524_14 HRGMv2_1524_14_39 46585 47370 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1524_14 HRGMv2_1524_14_40 47531 48511 + 3.A.1.34.1
TC HRGMv2_1524_14 HRGMv2_1524_14_41 48716 49639 + 3.A.1.34.1
TC HRGMv2_1524_14 HRGMv2_1524_14_42 49632 50426 + 3.A.1.34.1
pfam HRGMv2_1524_14 HRGMv2_1524_14_43 50499 52529 + Metallophos | 5_nucleotid_C
TC HRGMv2_1524_14 HRGMv2_1524_14_44 52659 53426 + 1.A.23.4.2
pfam HRGMv2_1524_14 HRGMv2_1524_14_45 53521 55437 + Bmp
pfam HRGMv2_1524_14 HRGMv2_1524_14_46 55434 56144 + Metallophos | Metallophos_2
TC HRGMv2_1524_14 HRGMv2_1524_14_47 56270 56977 - 1.C.82.1.1
Gene ID: HRGMv2_1524_14_29
Type: CAZyme
Location: 32106 - 33482 (-)
Gene ID: HRGMv2_1524_14_30
Type: TC
Location: 33636 - 34832 (-)
Gene ID: HRGMv2_1524_14_31
Type:
Location: 35007 - 35759 (-)
Gene ID: HRGMv2_1524_14_32
Type: CAZyme
Location: 35925 - 37298 (-)
Gene ID: HRGMv2_1524_14_33
Type: TF
Location: 37473 - 38225 (+)
Gene ID: HRGMv2_1524_14_34
Type: TC
Location: 38288 - 39952 (-)
Gene ID: HRGMv2_1524_14_35
Type: TC
Location: 40267 - 42627 (-)
Gene ID: HRGMv2_1524_14_36
Type: peptidase
Location: 43040 - 43942 (-)
Gene ID: HRGMv2_1524_14_37
Type: TC
Location: 44187 - 44750 (+)
Gene ID: HRGMv2_1524_14_38
Type: pfam
Location: 44932 - 46335 (+)
Gene ID: HRGMv2_1524_14_39
Type:
Location: 46585 - 47370 (+)
Gene ID: HRGMv2_1524_14_40
Type: TC
Location: 47531 - 48511 (+)
Gene ID: HRGMv2_1524_14_41
Type: TC
Location: 48716 - 49639 (+)
Gene ID: HRGMv2_1524_14_42
Type: TC
Location: 49632 - 50426 (+)
Gene ID: HRGMv2_1524_14_43
Type: pfam
Location: 50499 - 52529 (+)
Gene ID: HRGMv2_1524_14_44
Type: TC
Location: 52659 - 53426 (+)
Gene ID: HRGMv2_1524_14_45
Type: pfam
Location: 53521 - 55437 (+)
Gene ID: HRGMv2_1524_14_46
Type: pfam
Location: 55434 - 56144 (+)
Gene ID: HRGMv2_1524_14_47
Type: TC
Location: 56270 - 56977 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1524_14_31 vegan > omnivore 1.70539 0.00455
HRGMv2_1524_14_32 vegan > omnivore 1.42815 0.00455
HRGMv2_1524_14_43 vegan > omnivore 1.88134 0.00455
HRGMv2_1524_14_43 vegetarian > omnivore 1.39965 0.01557

🧭 Explore Read Mapping of CGC

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