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Cluster: HRGMv2_1523_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1523_3 HRGMv2_1523_3_39 45781 46950 - CE9
STP HRGMv2_1523_3 HRGMv2_1523_3_40 47068 48234 - SIS | SIS
TF HRGMv2_1523_3 HRGMv2_1523_3_41 48348 49079 - GntR
TC HRGMv2_1523_3 HRGMv2_1523_3_42 49264 50346 - 4.A.6.1.4
TC HRGMv2_1523_3 HRGMv2_1523_3_43 50336 51136 - 4.A.6.1.4
TC HRGMv2_1523_3 HRGMv2_1523_3_44 51227 51709 - 4.A.6.1.4
pfam HRGMv2_1523_3 HRGMv2_1523_3_45 51746 52027 - YajC
TC HRGMv2_1523_3 HRGMv2_1523_3_46 52027 52470 - 4.A.6.1.16
Gene ID: HRGMv2_1523_3_39
Type: CAZyme
Location: 45781 - 46950 (-)
Gene ID: HRGMv2_1523_3_40
Type: STP
Location: 47068 - 48234 (-)
Gene ID: HRGMv2_1523_3_41
Type: TF
Location: 48348 - 49079 (-)
Gene ID: HRGMv2_1523_3_42
Type: TC
Location: 49264 - 50346 (-)
Gene ID: HRGMv2_1523_3_43
Type: TC
Location: 50336 - 51136 (-)
Gene ID: HRGMv2_1523_3_44
Type: TC
Location: 51227 - 51709 (-)
Gene ID: HRGMv2_1523_3_45
Type: pfam
Location: 51746 - 52027 (-)
Gene ID: HRGMv2_1523_3_46
Type: TC
Location: 52027 - 52470 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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