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Cluster: HRGMv2_1523_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1523_2 HRGMv2_1523_2_13 11357 12064 + 1.C.82.1.1
pfam HRGMv2_1523_2 HRGMv2_1523_2_14 12192 12902 - Metallophos | Metallophos_2
pfam HRGMv2_1523_2 HRGMv2_1523_2_15 12899 14815 - Bmp
TC HRGMv2_1523_2 HRGMv2_1523_2_16 14909 15676 - 1.A.23.4.10
pfam HRGMv2_1523_2 HRGMv2_1523_2_17 15805 17835 - Metallophos | 5_nucleotid_C
TC HRGMv2_1523_2 HRGMv2_1523_2_18 17908 18702 - 3.A.1.34.1
TC HRGMv2_1523_2 HRGMv2_1523_2_19 18695 19618 - 3.A.1.34.1
TC HRGMv2_1523_2 HRGMv2_1523_2_20 19823 20803 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1523_2 HRGMv2_1523_2_21 20964 21749 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1523_2 HRGMv2_1523_2_22 21999 23402 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1523_2 HRGMv2_1523_2_23 23584 24147 - 4.A.1.2.6
peptidase HRGMv2_1523_2 HRGMv2_1523_2_24 24392 25294 + S09.UPW
TC HRGMv2_1523_2 HRGMv2_1523_2_25 25550 27910 + 9.A.8.1.6
TC HRGMv2_1523_2 HRGMv2_1523_2_26 28031 29227 + 2.A.1.2.18
CAZyme HRGMv2_1523_2 HRGMv2_1523_2_27 29382 30758 + GH13_20
Gene ID: HRGMv2_1523_2_13
Type: TC
Location: 11357 - 12064 (+)
Gene ID: HRGMv2_1523_2_14
Type: pfam
Location: 12192 - 12902 (-)
Gene ID: HRGMv2_1523_2_15
Type: pfam
Location: 12899 - 14815 (-)
Gene ID: HRGMv2_1523_2_16
Type: TC
Location: 14909 - 15676 (-)
Gene ID: HRGMv2_1523_2_17
Type: pfam
Location: 15805 - 17835 (-)
Gene ID: HRGMv2_1523_2_18
Type: TC
Location: 17908 - 18702 (-)
Gene ID: HRGMv2_1523_2_19
Type: TC
Location: 18695 - 19618 (-)
Gene ID: HRGMv2_1523_2_20
Type: TC
Location: 19823 - 20803 (-)
Gene ID: HRGMv2_1523_2_21
Type:
Location: 20964 - 21749 (-)
Gene ID: HRGMv2_1523_2_22
Type: pfam
Location: 21999 - 23402 (-)
Gene ID: HRGMv2_1523_2_23
Type: TC
Location: 23584 - 24147 (-)
Gene ID: HRGMv2_1523_2_24
Type: peptidase
Location: 24392 - 25294 (+)
Gene ID: HRGMv2_1523_2_25
Type: TC
Location: 25550 - 27910 (+)
Gene ID: HRGMv2_1523_2_26
Type: TC
Location: 28031 - 29227 (+)
Gene ID: HRGMv2_1523_2_27
Type: CAZyme
Location: 29382 - 30758 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1523_2_17 vegan > omnivore 1.79687 0.01047
HRGMv2_1523_2_17 vegetarian > omnivore 1.42173 0.02691

🧭 Explore Read Mapping of CGC

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