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Cluster: HRGMv2_1523_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1523_28 HRGMv2_1523_28_3 2808 4313 + GH77
CAZyme HRGMv2_1523_28 HRGMv2_1523_28_4 4442 6709 + GT35
TC HRGMv2_1523_28 HRGMv2_1523_28_5 7244 8443 - 3.A.1.1.22
TC HRGMv2_1523_28 HRGMv2_1523_28_6 8512 9351 - 3.A.1.1.45
TC HRGMv2_1523_28 HRGMv2_1523_28_7 9351 10205 - 3.A.1.1.45
TC HRGMv2_1523_28 HRGMv2_1523_28_8 10293 11609 - 3.A.1.1.45
TF HRGMv2_1523_28 HRGMv2_1523_28_9 11916 12635 - GntR
TC HRGMv2_1523_28 HRGMv2_1523_28_10 12865 15315 + 4.A.1.1.8
Gene ID: HRGMv2_1523_28_3
Type: CAZyme
Location: 2808 - 4313 (+)
Gene ID: HRGMv2_1523_28_4
Type: CAZyme
Location: 4442 - 6709 (+)
Gene ID: HRGMv2_1523_28_5
Type: TC
Location: 7244 - 8443 (-)
Gene ID: HRGMv2_1523_28_6
Type: TC
Location: 8512 - 9351 (-)
Gene ID: HRGMv2_1523_28_7
Type: TC
Location: 9351 - 10205 (-)
Gene ID: HRGMv2_1523_28_8
Type: TC
Location: 10293 - 11609 (-)
Gene ID: HRGMv2_1523_28_9
Type: TF
Location: 11916 - 12635 (-)
Gene ID: HRGMv2_1523_28_10
Type: TC
Location: 12865 - 15315 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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