Cluster: HRGMv2_1523_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1523
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1523_17 | HRGMv2_1523_17_7 | 6568 | 9576 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1523_17 | HRGMv2_1523_17_8 | 9580 | 10035 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1523_17 | HRGMv2_1523_17_9 | 10190 | 11653 | + | 2.A.3.7.4 |
| STP | HRGMv2_1523_17 | HRGMv2_1523_17_10 | 12075 | 12323 | + | PTS-HPr |
| STP | HRGMv2_1523_17 | HRGMv2_1523_17_11 | 12512 | 12754 | + | FeoA |
| TC | HRGMv2_1523_17 | HRGMv2_1523_17_12 | 12795 | 13016 | + | 9.A.8.1.6 |
| TC | HRGMv2_1523_17 | HRGMv2_1523_17_13 | 13140 | 15467 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1523_17_7
Type: CAZyme
Location: 6568 - 9576 (+)
Type: CAZyme
Location: 6568 - 9576 (+)
Gene ID: HRGMv2_1523_17_8
Type:
Location: 9580 - 10035 (+)
Type:
Location: 9580 - 10035 (+)
Gene ID: HRGMv2_1523_17_9
Type: TC
Location: 10190 - 11653 (+)
Type: TC
Location: 10190 - 11653 (+)
Gene ID: HRGMv2_1523_17_10
Type: STP
Location: 12075 - 12323 (+)
Type: STP
Location: 12075 - 12323 (+)
Gene ID: HRGMv2_1523_17_11
Type: STP
Location: 12512 - 12754 (+)
Type: STP
Location: 12512 - 12754 (+)
Gene ID: HRGMv2_1523_17_12
Type: TC
Location: 12795 - 13016 (+)
Type: TC
Location: 12795 - 13016 (+)
Gene ID: HRGMv2_1523_17_13
Type: TC
Location: 13140 - 15467 (+)
Type: TC
Location: 13140 - 15467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.