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Cluster: HRGMv2_1521_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1521_17 HRGMv2_1521_17_4 2899 3825 - CE7
TC HRGMv2_1521_17 HRGMv2_1521_17_5 3957 4784 - 3.A.1.5.27
TC HRGMv2_1521_17 HRGMv2_1521_17_6 4785 6800 - 3.A.1.5.25
TC HRGMv2_1521_17 HRGMv2_1521_17_7 6804 7760 - 3.A.1.5.38
TC HRGMv2_1521_17 HRGMv2_1521_17_8 7918 9531 - 3.A.1.5.27
pfam HRGMv2_1521_17 HRGMv2_1521_17_9 9897 11837 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1521_17 HRGMv2_1521_17_10 11844 14132 - 2.A.66.4.4
pfam HRGMv2_1521_17 HRGMv2_1521_17_11 14136 14636 - tRNA_edit
pfam HRGMv2_1521_17 HRGMv2_1521_17_12 14770 17649 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_1521_17 HRGMv2_1521_17_13 17909 18739 + 3.A.1.132.3
Gene ID: HRGMv2_1521_17_4
Type: CAZyme
Location: 2899 - 3825 (-)
Gene ID: HRGMv2_1521_17_5
Type: TC
Location: 3957 - 4784 (-)
Gene ID: HRGMv2_1521_17_6
Type: TC
Location: 4785 - 6800 (-)
Gene ID: HRGMv2_1521_17_7
Type: TC
Location: 6804 - 7760 (-)
Gene ID: HRGMv2_1521_17_8
Type: TC
Location: 7918 - 9531 (-)
Gene ID: HRGMv2_1521_17_9
Type: pfam
Location: 9897 - 11837 (-)
Gene ID: HRGMv2_1521_17_10
Type: TC
Location: 11844 - 14132 (-)
Gene ID: HRGMv2_1521_17_11
Type: pfam
Location: 14136 - 14636 (-)
Gene ID: HRGMv2_1521_17_12
Type: pfam
Location: 14770 - 17649 (-)
Gene ID: HRGMv2_1521_17_13
Type: TC
Location: 17909 - 18739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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