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Cluster: HRGMv2_1521_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1521_6 HRGMv2_1521_6_8 10928 13381 - 4.A.1.1.8
TF HRGMv2_1521_6 HRGMv2_1521_6_9 13609 14328 + GntR
TC HRGMv2_1521_6 HRGMv2_1521_6_10 14635 15951 + 3.A.1.1.45
TC HRGMv2_1521_6 HRGMv2_1521_6_11 16039 16893 + 3.A.1.1.45
TC HRGMv2_1521_6 HRGMv2_1521_6_12 16893 17732 + 3.A.1.1.45
TC HRGMv2_1521_6 HRGMv2_1521_6_13 17801 19000 + 3.A.1.1.22
CAZyme HRGMv2_1521_6 HRGMv2_1521_6_14 19616 21883 - GT35
CAZyme HRGMv2_1521_6 HRGMv2_1521_6_15 22012 23517 - GH77
Gene ID: HRGMv2_1521_6_8
Type: TC
Location: 10928 - 13381 (-)
Gene ID: HRGMv2_1521_6_9
Type: TF
Location: 13609 - 14328 (+)
Gene ID: HRGMv2_1521_6_10
Type: TC
Location: 14635 - 15951 (+)
Gene ID: HRGMv2_1521_6_11
Type: TC
Location: 16039 - 16893 (+)
Gene ID: HRGMv2_1521_6_12
Type: TC
Location: 16893 - 17732 (+)
Gene ID: HRGMv2_1521_6_13
Type: TC
Location: 17801 - 19000 (+)
Gene ID: HRGMv2_1521_6_14
Type: CAZyme
Location: 19616 - 21883 (-)
Gene ID: HRGMv2_1521_6_15
Type: CAZyme
Location: 22012 - 23517 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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