dbCAN Logo

Cluster: HRGMv2_1520_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1520_22 HRGMv2_1520_22_13 11572 12960 + GH1
TF HRGMv2_1520_22 HRGMv2_1520_22_14 12981 13802 - HTH_6
pfam HRGMv2_1520_22 HRGMv2_1520_22_15 14090 14857 + YdjC
TC HRGMv2_1520_22 HRGMv2_1520_22_16 15012 16304 + 4.A.3.2.2
TC HRGMv2_1520_22 HRGMv2_1520_22_17 16353 16649 + 4.A.3.2.6
TC HRGMv2_1520_22 HRGMv2_1520_22_18 16652 16993 + 4.A.3.2.1
CAZyme HRGMv2_1520_22 HRGMv2_1520_22_19 17079 18566 + GH1
pfam HRGMv2_1520_22 HRGMv2_1520_22_20 18591 19499 + ROK
CAZyme HRGMv2_1520_22 HRGMv2_1520_22_21 19911 21341 + GH1
Gene ID: HRGMv2_1520_22_13
Type: CAZyme
Location: 11572 - 12960 (+)
Gene ID: HRGMv2_1520_22_14
Type: TF
Location: 12981 - 13802 (-)
Gene ID: HRGMv2_1520_22_15
Type: pfam
Location: 14090 - 14857 (+)
Gene ID: HRGMv2_1520_22_16
Type: TC
Location: 15012 - 16304 (+)
Gene ID: HRGMv2_1520_22_17
Type: TC
Location: 16353 - 16649 (+)
Gene ID: HRGMv2_1520_22_18
Type: TC
Location: 16652 - 16993 (+)
Gene ID: HRGMv2_1520_22_19
Type: CAZyme
Location: 17079 - 18566 (+)
Gene ID: HRGMv2_1520_22_20
Type: pfam
Location: 18591 - 19499 (+)
Gene ID: HRGMv2_1520_22_21
Type: CAZyme
Location: 19911 - 21341 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List