Cluster: HRGMv2_1520_CGC1

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1520_3	HRGMv2_1520_3_7	17536	18780	-	GT4
pfam	HRGMv2_1520_3	HRGMv2_1520_3_8	18796	19560	-	BcrAD_BadFG
pfam	HRGMv2_1520_3	HRGMv2_1520_3_9	19612	20775	-	HGD-D
TC	HRGMv2_1520_3	HRGMv2_1520_3_10	20853	21638	-	3.A.1.5.36
TC	HRGMv2_1520_3	HRGMv2_1520_3_11	21625	22623	-	3.A.1.5.35
TC	HRGMv2_1520_3	HRGMv2_1520_3_12	22627	23454	-	3.A.1.5.39
TC	HRGMv2_1520_3	HRGMv2_1520_3_13	23454	24407	-	3.A.1.5.11
TC	HRGMv2_1520_3	HRGMv2_1520_3_14	24494	26104	-	3.A.1.5.11
pfam	HRGMv2_1520_3	HRGMv2_1520_3_15	26289	27572	-	HGD-D
TC	HRGMv2_1520_3	HRGMv2_1520_3_16	28023	29093	-	3.A.1.1.3
TC	HRGMv2_1520_3	HRGMv2_1520_3_17	29097	30578	-	3.A.1.8.1

Gene ID: HRGMv2_1520_3_7
Type: CAZyme
Location: 17536 - 18780 (-)

Gene ID: HRGMv2_1520_3_8
Type: pfam
Location: 18796 - 19560 (-)

Gene ID: HRGMv2_1520_3_9
Type: pfam
Location: 19612 - 20775 (-)

Gene ID: HRGMv2_1520_3_10
Type: TC
Location: 20853 - 21638 (-)

Gene ID: HRGMv2_1520_3_11
Type: TC
Location: 21625 - 22623 (-)

Gene ID: HRGMv2_1520_3_12
Type: TC
Location: 22627 - 23454 (-)

Gene ID: HRGMv2_1520_3_13
Type: TC
Location: 23454 - 24407 (-)

Gene ID: HRGMv2_1520_3_14
Type: TC
Location: 24494 - 26104 (-)

Gene ID: HRGMv2_1520_3_15
Type: pfam
Location: 26289 - 27572 (-)

Gene ID: HRGMv2_1520_3_16
Type: TC
Location: 28023 - 29093 (-)

Gene ID: HRGMv2_1520_3_17
Type: TC
Location: 29097 - 30578 (-)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1520_3_10	vegan > omnivore	2.76068	0.03783
HRGMv2_1520_3_11	vegan > omnivore	1.27270	0.03783
HRGMv2_1520_3_12	vegan > omnivore	3.05692	0.03783
HRGMv2_1520_3_13	vegan > omnivore	2.82960	0.03783
HRGMv2_1520_3_14	vegan > omnivore	3.40231	0.03783