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Cluster: HRGMv2_1519_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1519_24 HRGMv2_1519_24_3 2757 3524 - 1.A.23.4.10
pfam HRGMv2_1519_24 HRGMv2_1519_24_4 3653 5683 - Metallophos | 5_nucleotid_C
TC HRGMv2_1519_24 HRGMv2_1519_24_5 5800 6594 - 3.A.1.34.1
TC HRGMv2_1519_24 HRGMv2_1519_24_6 6587 7510 - 3.A.1.34.1
TC HRGMv2_1519_24 HRGMv2_1519_24_7 7715 8695 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1519_24 HRGMv2_1519_24_8 8856 9641 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1519_24 HRGMv2_1519_24_9 9891 11294 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1519_24 HRGMv2_1519_24_10 11476 12039 - 4.A.1.2.6
peptidase HRGMv2_1519_24 HRGMv2_1519_24_11 12284 13186 + S09.UPW
TC HRGMv2_1519_24 HRGMv2_1519_24_12 13442 15799 + 9.A.8.1.6
pfam HRGMv2_1519_24 HRGMv2_1519_24_13 15895 16377 + tRNA_edit
TC HRGMv2_1519_24 HRGMv2_1519_24_14 16481 17677 + 2.A.1.2.18
CAZyme HRGMv2_1519_24 HRGMv2_1519_24_15 18075 19451 + GH13_20
Gene ID: HRGMv2_1519_24_3
Type: TC
Location: 2757 - 3524 (-)
Gene ID: HRGMv2_1519_24_4
Type: pfam
Location: 3653 - 5683 (-)
Gene ID: HRGMv2_1519_24_5
Type: TC
Location: 5800 - 6594 (-)
Gene ID: HRGMv2_1519_24_6
Type: TC
Location: 6587 - 7510 (-)
Gene ID: HRGMv2_1519_24_7
Type: TC
Location: 7715 - 8695 (-)
Gene ID: HRGMv2_1519_24_8
Type:
Location: 8856 - 9641 (-)
Gene ID: HRGMv2_1519_24_9
Type: pfam
Location: 9891 - 11294 (-)
Gene ID: HRGMv2_1519_24_10
Type: TC
Location: 11476 - 12039 (-)
Gene ID: HRGMv2_1519_24_11
Type: peptidase
Location: 12284 - 13186 (+)
Gene ID: HRGMv2_1519_24_12
Type: TC
Location: 13442 - 15799 (+)
Gene ID: HRGMv2_1519_24_13
Type: pfam
Location: 15895 - 16377 (+)
Gene ID: HRGMv2_1519_24_14
Type: TC
Location: 16481 - 17677 (+)
Gene ID: HRGMv2_1519_24_15
Type: CAZyme
Location: 18075 - 19451 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1519_24_4 vegan > omnivore 2.05116 0.01260
HRGMv2_1519_24_4 vegetarian > omnivore 1.48174 0.00861

🧭 Explore Read Mapping of CGC

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