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Cluster: HRGMv2_1519_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1519_8 HRGMv2_1519_8_15 15825 17246 - GH1
TC HRGMv2_1519_8 HRGMv2_1519_8_16 17322 19100 - 4.A.3.1.1
TF HRGMv2_1519_8 HRGMv2_1519_8_17 19376 20386 + LacI
CAZyme HRGMv2_1519_8 HRGMv2_1519_8_18 20813 22252 - GH1
TC HRGMv2_1519_8 HRGMv2_1519_8_19 22319 24091 - 4.A.3.1.1
TF HRGMv2_1519_8 HRGMv2_1519_8_20 24449 25453 + LacI
TC HRGMv2_1519_8 HRGMv2_1519_8_21 25668 26006 + 4.A.3.1.2
Gene ID: HRGMv2_1519_8_15
Type: CAZyme
Location: 15825 - 17246 (-)
Gene ID: HRGMv2_1519_8_16
Type: TC
Location: 17322 - 19100 (-)
Gene ID: HRGMv2_1519_8_17
Type: TF
Location: 19376 - 20386 (+)
Gene ID: HRGMv2_1519_8_18
Type: CAZyme
Location: 20813 - 22252 (-)
Gene ID: HRGMv2_1519_8_19
Type: TC
Location: 22319 - 24091 (-)
Gene ID: HRGMv2_1519_8_20
Type: TF
Location: 24449 - 25453 (+)
Gene ID: HRGMv2_1519_8_21
Type: TC
Location: 25668 - 26006 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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