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Cluster: HRGMv2_1518_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1518_9 HRGMv2_1518_9_9 8706 9149 + 4.A.6.1.16
pfam HRGMv2_1518_9 HRGMv2_1518_9_10 9149 9430 + YajC
TC HRGMv2_1518_9 HRGMv2_1518_9_11 9467 9949 + 4.A.6.1.4
TC HRGMv2_1518_9 HRGMv2_1518_9_12 10040 10840 + 4.A.6.1.4
TC HRGMv2_1518_9 HRGMv2_1518_9_13 10830 11912 + 4.A.6.1.4
TF HRGMv2_1518_9 HRGMv2_1518_9_14 12097 12828 + GntR
STP HRGMv2_1518_9 HRGMv2_1518_9_15 12943 14109 + SIS | SIS
CAZyme HRGMv2_1518_9 HRGMv2_1518_9_16 14227 15396 + CE9
Gene ID: HRGMv2_1518_9_9
Type: TC
Location: 8706 - 9149 (+)
Gene ID: HRGMv2_1518_9_10
Type: pfam
Location: 9149 - 9430 (+)
Gene ID: HRGMv2_1518_9_11
Type: TC
Location: 9467 - 9949 (+)
Gene ID: HRGMv2_1518_9_12
Type: TC
Location: 10040 - 10840 (+)
Gene ID: HRGMv2_1518_9_13
Type: TC
Location: 10830 - 11912 (+)
Gene ID: HRGMv2_1518_9_14
Type: TF
Location: 12097 - 12828 (+)
Gene ID: HRGMv2_1518_9_15
Type: STP
Location: 12943 - 14109 (+)
Gene ID: HRGMv2_1518_9_16
Type: CAZyme
Location: 14227 - 15396 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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