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Cluster: HRGMv2_1518_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1518_4 HRGMv2_1518_4_7 8976 10259 - 2.A.66.2.10
NULL(UNKNOWN) HRGMv2_1518_4 HRGMv2_1518_4_8 10355 11686 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_1518_4 HRGMv2_1518_4_9 11734 12882 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1518_4 HRGMv2_1518_4_10 12892 13833 - GT2
CAZyme HRGMv2_1518_4 HRGMv2_1518_4_11 13879 15045 - GT4
pfam HRGMv2_1518_4 HRGMv2_1518_4_12 15047 16192 - Radical_SAM | SPASM
CAZyme HRGMv2_1518_4 HRGMv2_1518_4_13 16211 17314 - GT4
pfam HRGMv2_1518_4 HRGMv2_1518_4_14 17328 18587 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_1518_4 HRGMv2_1518_4_15 18626 19387 - 9.B.18.1.2
Gene ID: HRGMv2_1518_4_7
Type: TC
Location: 8976 - 10259 (-)
Gene ID: HRGMv2_1518_4_8
Type:
Location: 10355 - 11686 (-)
Gene ID: HRGMv2_1518_4_9
Type:
Location: 11734 - 12882 (-)
Gene ID: HRGMv2_1518_4_10
Type: CAZyme
Location: 12892 - 13833 (-)
Gene ID: HRGMv2_1518_4_11
Type: CAZyme
Location: 13879 - 15045 (-)
Gene ID: HRGMv2_1518_4_12
Type: pfam
Location: 15047 - 16192 (-)
Gene ID: HRGMv2_1518_4_13
Type: CAZyme
Location: 16211 - 17314 (-)
Gene ID: HRGMv2_1518_4_14
Type: pfam
Location: 17328 - 18587 (-)
Gene ID: HRGMv2_1518_4_15
Type: TC
Location: 18626 - 19387 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1518_4_12 vegetarian > vegan 1.72736 0.04493
HRGMv2_1518_4_13 vegetarian > vegan 3.06091 0.04493

🧭 Explore Read Mapping of CGC

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