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Cluster: HRGMv2_1517_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1517_28 HRGMv2_1517_28_7 5944 6387 + 4.A.6.1.16
pfam HRGMv2_1517_28 HRGMv2_1517_28_8 6387 6668 + YajC
TC HRGMv2_1517_28 HRGMv2_1517_28_9 6705 7187 + 4.A.6.1.4
TC HRGMv2_1517_28 HRGMv2_1517_28_10 7278 8078 + 4.A.6.1.4
TC HRGMv2_1517_28 HRGMv2_1517_28_11 8068 9150 + 4.A.6.1.4
TF HRGMv2_1517_28 HRGMv2_1517_28_12 9335 10066 + GntR
STP HRGMv2_1517_28 HRGMv2_1517_28_13 10181 11347 + SIS | SIS
CAZyme HRGMv2_1517_28 HRGMv2_1517_28_14 11465 12634 + CE9
Gene ID: HRGMv2_1517_28_7
Type: TC
Location: 5944 - 6387 (+)
Gene ID: HRGMv2_1517_28_8
Type: pfam
Location: 6387 - 6668 (+)
Gene ID: HRGMv2_1517_28_9
Type: TC
Location: 6705 - 7187 (+)
Gene ID: HRGMv2_1517_28_10
Type: TC
Location: 7278 - 8078 (+)
Gene ID: HRGMv2_1517_28_11
Type: TC
Location: 8068 - 9150 (+)
Gene ID: HRGMv2_1517_28_12
Type: TF
Location: 9335 - 10066 (+)
Gene ID: HRGMv2_1517_28_13
Type: STP
Location: 10181 - 11347 (+)
Gene ID: HRGMv2_1517_28_14
Type: CAZyme
Location: 11465 - 12634 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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