Cluster: HRGMv2_1517_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1517
- CGC Family ID: CGCFAM_01160
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_12 | 14088 | 15896 | + | GH154 |
| pfam | HRGMv2_1517_1 | HRGMv2_1517_1_13 | 16049 | 16480 | + | EIIA-man |
| TC | HRGMv2_1517_1 | HRGMv2_1517_1_14 | 16524 | 17006 | + | 4.A.6.1.11 |
| TC | HRGMv2_1517_1 | HRGMv2_1517_1_15 | 17077 | 17946 | + | 4.A.6.1.11 |
| TC | HRGMv2_1517_1 | HRGMv2_1517_1_16 | 17939 | 18820 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | HRGMv2_1517_1 | HRGMv2_1517_1_17 | 18898 | 19542 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_18 | 19523 | 20674 | + | GH88 |
| pfam | HRGMv2_1517_1 | HRGMv2_1517_1_19 | 20668 | 21510 | + | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_20 | 21514 | 23145 | + | CBM91 | GH43_11 |
| NULL(UNKNOWN) | HRGMv2_1517_1 | HRGMv2_1517_1_21 | 23156 | 23968 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_22 | 23968 | 24900 | + | GH43_24 |
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_23 | 24918 | 26141 | + | GH28 |
| CAZyme | HRGMv2_1517_1 | HRGMv2_1517_1_24 | 26144 | 27856 | + | GH154 |
Gene ID: HRGMv2_1517_1_12
Type: CAZyme
Location: 14088 - 15896 (+)
Type: CAZyme
Location: 14088 - 15896 (+)
Gene ID: HRGMv2_1517_1_13
Type: pfam
Location: 16049 - 16480 (+)
Type: pfam
Location: 16049 - 16480 (+)
Gene ID: HRGMv2_1517_1_14
Type: TC
Location: 16524 - 17006 (+)
Type: TC
Location: 16524 - 17006 (+)
Gene ID: HRGMv2_1517_1_15
Type: TC
Location: 17077 - 17946 (+)
Type: TC
Location: 17077 - 17946 (+)
Gene ID: HRGMv2_1517_1_16
Type: TC
Location: 17939 - 18820 (+)
Type: TC
Location: 17939 - 18820 (+)
Gene ID: HRGMv2_1517_1_17
Type:
Location: 18898 - 19542 (+)
Type:
Location: 18898 - 19542 (+)
Gene ID: HRGMv2_1517_1_18
Type: CAZyme
Location: 19523 - 20674 (+)
Type: CAZyme
Location: 19523 - 20674 (+)
Gene ID: HRGMv2_1517_1_19
Type: pfam
Location: 20668 - 21510 (+)
Type: pfam
Location: 20668 - 21510 (+)
Gene ID: HRGMv2_1517_1_20
Type: CAZyme
Location: 21514 - 23145 (+)
Type: CAZyme
Location: 21514 - 23145 (+)
Gene ID: HRGMv2_1517_1_21
Type:
Location: 23156 - 23968 (+)
Type:
Location: 23156 - 23968 (+)
Gene ID: HRGMv2_1517_1_22
Type: CAZyme
Location: 23968 - 24900 (+)
Type: CAZyme
Location: 23968 - 24900 (+)
Gene ID: HRGMv2_1517_1_23
Type: CAZyme
Location: 24918 - 26141 (+)
Type: CAZyme
Location: 24918 - 26141 (+)
Gene ID: HRGMv2_1517_1_24
Type: CAZyme
Location: 26144 - 27856 (+)
Type: CAZyme
Location: 26144 - 27856 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.