Cluster: HRGMv2_1516_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_1516
- CGC Family ID: CGCFAM_00014
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1516_15 | HRGMv2_1516_15_1 | 2 | 721 | + | 4.A.3.1.1 |
| TF | HRGMv2_1516_15 | HRGMv2_1516_15_2 | 1056 | 2066 | - | LacI |
| TC | HRGMv2_1516_15 | HRGMv2_1516_15_3 | 2342 | 4120 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1516_15 | HRGMv2_1516_15_4 | 4196 | 5617 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_1516_15 | HRGMv2_1516_15_5 | 5914 | 6180 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1516_15 | HRGMv2_1516_15_6 | 6170 | 6475 | + | ParE_toxin |
| TC | HRGMv2_1516_15 | HRGMv2_1516_15_7 | 6836 | 8530 | - | 4.A.3.1.1 |
Gene ID: HRGMv2_1516_15_1
Type: TC
Location: 2 - 721 (+)
Type: TC
Location: 2 - 721 (+)
Gene ID: HRGMv2_1516_15_2
Type: TF
Location: 1056 - 2066 (-)
Type: TF
Location: 1056 - 2066 (-)
Gene ID: HRGMv2_1516_15_3
Type: TC
Location: 2342 - 4120 (+)
Type: TC
Location: 2342 - 4120 (+)
Gene ID: HRGMv2_1516_15_4
Type: CAZyme
Location: 4196 - 5617 (+)
Type: CAZyme
Location: 4196 - 5617 (+)
Gene ID: HRGMv2_1516_15_5
Type:
Location: 5914 - 6180 (+)
Type:
Location: 5914 - 6180 (+)
Gene ID: HRGMv2_1516_15_6
Type: pfam
Location: 6170 - 6475 (+)
Type: pfam
Location: 6170 - 6475 (+)
Gene ID: HRGMv2_1516_15_7
Type: TC
Location: 6836 - 8530 (-)
Type: TC
Location: 6836 - 8530 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1516_15_1 | vegetarian > omnivore | 1.10973 | 0.01548 |