Cluster: HRGMv2_1516_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1516
- CGC Family ID: CGCFAM_03691
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1516_13 | HRGMv2_1516_13_17 | 27579 | 28295 | - | 9.B.143.2.3 |
| pfam | HRGMv2_1516_13 | HRGMv2_1516_13_18 | 28549 | 30684 | + | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_1516_13 | HRGMv2_1516_13_19 | 30811 | 31293 | - | 4.A.1.2.11 |
| TC | HRGMv2_1516_13 | HRGMv2_1516_13_20 | 31342 | 32181 | - | 4.A.1.2.11 |
| CAZyme | HRGMv2_1516_13 | HRGMv2_1516_13_21 | 32193 | 33671 | - | GH1 |
Gene ID: HRGMv2_1516_13_17
Type: TC
Location: 27579 - 28295 (-)
Type: TC
Location: 27579 - 28295 (-)
Gene ID: HRGMv2_1516_13_18
Type: pfam
Location: 28549 - 30684 (+)
Type: pfam
Location: 28549 - 30684 (+)
Gene ID: HRGMv2_1516_13_19
Type: TC
Location: 30811 - 31293 (-)
Type: TC
Location: 30811 - 31293 (-)
Gene ID: HRGMv2_1516_13_20
Type: TC
Location: 31342 - 32181 (-)
Type: TC
Location: 31342 - 32181 (-)
Gene ID: HRGMv2_1516_13_21
Type: CAZyme
Location: 32193 - 33671 (-)
Type: CAZyme
Location: 32193 - 33671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1516_13_19 | vegan > omnivore | 1.80370 | 0.00863 |
| HRGMv2_1516_13_20 | vegan > omnivore | 1.20231 | 0.00863 |
| HRGMv2_1516_13_21 | vegan > omnivore | 1.43795 | 0.00863 |