Cluster: HRGMv2_1516_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1516
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1516_82 | HRGMv2_1516_82_2 | 186 | 524 | - | 4.A.3.1.2 |
| TF | HRGMv2_1516_82 | HRGMv2_1516_82_3 | 739 | 1743 | - | LacI |
| TC | HRGMv2_1516_82 | HRGMv2_1516_82_4 | 2100 | 3875 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1516_82 | HRGMv2_1516_82_5 | 3942 | 5381 | + | GH1 |
| TF | HRGMv2_1516_82 | HRGMv2_1516_82_6 | 5643 | 6680 | - | LacI |
| CAZyme | HRGMv2_1516_82 | HRGMv2_1516_82_7 | 7022 | 8464 | + | GH1 |
| TC | HRGMv2_1516_82 | HRGMv2_1516_82_8 | 8641 | 9789 | + | 4.A.3.1.1 |
Gene ID: HRGMv2_1516_82_2
Type: TC
Location: 186 - 524 (-)
Type: TC
Location: 186 - 524 (-)
Gene ID: HRGMv2_1516_82_3
Type: TF
Location: 739 - 1743 (-)
Type: TF
Location: 739 - 1743 (-)
Gene ID: HRGMv2_1516_82_4
Type: TC
Location: 2100 - 3875 (+)
Type: TC
Location: 2100 - 3875 (+)
Gene ID: HRGMv2_1516_82_5
Type: CAZyme
Location: 3942 - 5381 (+)
Type: CAZyme
Location: 3942 - 5381 (+)
Gene ID: HRGMv2_1516_82_6
Type: TF
Location: 5643 - 6680 (-)
Type: TF
Location: 5643 - 6680 (-)
Gene ID: HRGMv2_1516_82_7
Type: CAZyme
Location: 7022 - 8464 (+)
Type: CAZyme
Location: 7022 - 8464 (+)
Gene ID: HRGMv2_1516_82_8
Type: TC
Location: 8641 - 9789 (+)
Type: TC
Location: 8641 - 9789 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1516_82_6 | vegetarian > omnivore | 1.18152 | 0.01548 |