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Cluster: HRGMv2_1513_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1513_17 HRGMv2_1513_17_23 33419 34168 + 9.B.18.1.2
pfam HRGMv2_1513_17 HRGMv2_1513_17_24 34207 35466 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
pfam HRGMv2_1513_17 HRGMv2_1513_17_25 35470 35943 + Alg14
CAZyme HRGMv2_1513_17 HRGMv2_1513_17_26 35956 36447 + GT1
pfam HRGMv2_1513_17 HRGMv2_1513_17_27 36444 37334 + ATPgrasp_TupA
CAZyme HRGMv2_1513_17 HRGMv2_1513_17_28 37582 38685 + GT4
NULL(UNKNOWN) HRGMv2_1513_17 HRGMv2_1513_17_29 38682 39176 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1513_17 HRGMv2_1513_17_30 39190 40113 + GT2
Gene ID: HRGMv2_1513_17_23
Type: TC
Location: 33419 - 34168 (+)
Gene ID: HRGMv2_1513_17_24
Type: pfam
Location: 34207 - 35466 (+)
Gene ID: HRGMv2_1513_17_25
Type: pfam
Location: 35470 - 35943 (+)
Gene ID: HRGMv2_1513_17_26
Type: CAZyme
Location: 35956 - 36447 (+)
Gene ID: HRGMv2_1513_17_27
Type: pfam
Location: 36444 - 37334 (+)
Gene ID: HRGMv2_1513_17_28
Type: CAZyme
Location: 37582 - 38685 (+)
Gene ID: HRGMv2_1513_17_29
Type:
Location: 38682 - 39176 (+)
Gene ID: HRGMv2_1513_17_30
Type: CAZyme
Location: 39190 - 40113 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1513_17_24 vegan > omnivore 1.09555 0.02934

🧭 Explore Read Mapping of CGC

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