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Cluster: HRGMv2_1512_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1512_1 HRGMv2_1512_1_3 3701 5083 - GH4
TC HRGMv2_1512_1 HRGMv2_1512_1_4 5087 6703 - 4.A.1.1.3
pfam HRGMv2_1512_1 HRGMv2_1512_1_5 6803 7669 - PRD | PRD | CAT_RBD
TC HRGMv2_1512_1 HRGMv2_1512_1_6 7676 8188 - 4.A.1.2.5
STP HRGMv2_1512_1 HRGMv2_1512_1_7 8469 9230 - Fer4
TC HRGMv2_1512_1 HRGMv2_1512_1_8 9849 11438 - 1.I.1.1.3
STP HRGMv2_1512_1 HRGMv2_1512_1_9 11946 12908 + FHA
STP HRGMv2_1512_1 HRGMv2_1512_1_10 13080 15164 + Pkinase
TC HRGMv2_1512_1 HRGMv2_1512_1_11 15497 17839 + 3.A.3.5.15
Gene ID: HRGMv2_1512_1_3
Type: CAZyme
Location: 3701 - 5083 (-)
Gene ID: HRGMv2_1512_1_4
Type: TC
Location: 5087 - 6703 (-)
Gene ID: HRGMv2_1512_1_5
Type: pfam
Location: 6803 - 7669 (-)
Gene ID: HRGMv2_1512_1_6
Type: TC
Location: 7676 - 8188 (-)
Gene ID: HRGMv2_1512_1_7
Type: STP
Location: 8469 - 9230 (-)
Gene ID: HRGMv2_1512_1_8
Type: TC
Location: 9849 - 11438 (-)
Gene ID: HRGMv2_1512_1_9
Type: STP
Location: 11946 - 12908 (+)
Gene ID: HRGMv2_1512_1_10
Type: STP
Location: 13080 - 15164 (+)
Gene ID: HRGMv2_1512_1_11
Type: TC
Location: 15497 - 17839 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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