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Cluster: HRGMv2_1510_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1510_46 HRGMv2_1510_46_7 4484 5653 - CE9
STP HRGMv2_1510_46 HRGMv2_1510_46_8 5772 6938 - SIS | SIS
TF HRGMv2_1510_46 HRGMv2_1510_46_9 7053 7784 - GntR
TC HRGMv2_1510_46 HRGMv2_1510_46_10 7971 9053 - 4.A.6.1.4
TC HRGMv2_1510_46 HRGMv2_1510_46_11 9043 9843 - 4.A.6.1.4
TC HRGMv2_1510_46 HRGMv2_1510_46_12 9934 10416 - 4.A.6.1.4
pfam HRGMv2_1510_46 HRGMv2_1510_46_13 10453 10734 - YajC
TC HRGMv2_1510_46 HRGMv2_1510_46_14 10734 11177 - 4.A.6.1.16
Gene ID: HRGMv2_1510_46_7
Type: CAZyme
Location: 4484 - 5653 (-)
Gene ID: HRGMv2_1510_46_8
Type: STP
Location: 5772 - 6938 (-)
Gene ID: HRGMv2_1510_46_9
Type: TF
Location: 7053 - 7784 (-)
Gene ID: HRGMv2_1510_46_10
Type: TC
Location: 7971 - 9053 (-)
Gene ID: HRGMv2_1510_46_11
Type: TC
Location: 9043 - 9843 (-)
Gene ID: HRGMv2_1510_46_12
Type: TC
Location: 9934 - 10416 (-)
Gene ID: HRGMv2_1510_46_13
Type: pfam
Location: 10453 - 10734 (-)
Gene ID: HRGMv2_1510_46_14
Type: TC
Location: 10734 - 11177 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1510_46_13 vegan > omnivore 1.01888 0.01287

🧭 Explore Read Mapping of CGC

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