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Cluster: HRGMv2_1509_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1509_35 HRGMv2_1509_35_3 1882 2808 - CE7
TC HRGMv2_1509_35 HRGMv2_1509_35_4 2940 3767 - 3.A.1.5.27
TC HRGMv2_1509_35 HRGMv2_1509_35_5 3768 5783 - 3.A.1.5.25
TC HRGMv2_1509_35 HRGMv2_1509_35_6 5787 6743 - 3.A.1.5.38
TC HRGMv2_1509_35 HRGMv2_1509_35_7 6901 8514 - 3.A.1.5.27
pfam HRGMv2_1509_35 HRGMv2_1509_35_8 8880 10820 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1509_35 HRGMv2_1509_35_9 10827 12509 - 2.A.66.4.4
Gene ID: HRGMv2_1509_35_3
Type: CAZyme
Location: 1882 - 2808 (-)
Gene ID: HRGMv2_1509_35_4
Type: TC
Location: 2940 - 3767 (-)
Gene ID: HRGMv2_1509_35_5
Type: TC
Location: 3768 - 5783 (-)
Gene ID: HRGMv2_1509_35_6
Type: TC
Location: 5787 - 6743 (-)
Gene ID: HRGMv2_1509_35_7
Type: TC
Location: 6901 - 8514 (-)
Gene ID: HRGMv2_1509_35_8
Type: pfam
Location: 8880 - 10820 (-)
Gene ID: HRGMv2_1509_35_9
Type: TC
Location: 10827 - 12509 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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