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Cluster: HRGMv2_1506_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1506_1 HRGMv2_1506_1_37 39369 40538 - CE9
STP HRGMv2_1506_1 HRGMv2_1506_1_38 40656 41822 - SIS | SIS
TF HRGMv2_1506_1 HRGMv2_1506_1_39 41937 42668 - GntR
TC HRGMv2_1506_1 HRGMv2_1506_1_40 42853 43935 - 4.A.6.1.4
TC HRGMv2_1506_1 HRGMv2_1506_1_41 43925 44725 - 4.A.6.1.4
TC HRGMv2_1506_1 HRGMv2_1506_1_42 44816 45298 - 4.A.6.1.4
pfam HRGMv2_1506_1 HRGMv2_1506_1_43 45335 45616 - YajC
TC HRGMv2_1506_1 HRGMv2_1506_1_44 45616 46059 - 4.A.6.1.16
Gene ID: HRGMv2_1506_1_37
Type: CAZyme
Location: 39369 - 40538 (-)
Gene ID: HRGMv2_1506_1_38
Type: STP
Location: 40656 - 41822 (-)
Gene ID: HRGMv2_1506_1_39
Type: TF
Location: 41937 - 42668 (-)
Gene ID: HRGMv2_1506_1_40
Type: TC
Location: 42853 - 43935 (-)
Gene ID: HRGMv2_1506_1_41
Type: TC
Location: 43925 - 44725 (-)
Gene ID: HRGMv2_1506_1_42
Type: TC
Location: 44816 - 45298 (-)
Gene ID: HRGMv2_1506_1_43
Type: pfam
Location: 45335 - 45616 (-)
Gene ID: HRGMv2_1506_1_44
Type: TC
Location: 45616 - 46059 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1506_1_43 vegan > omnivore 1.01186 0.00701

🧭 Explore Read Mapping of CGC

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