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Cluster: HRGMv2_1503_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1503_30 HRGMv2_1503_30_18 17674 18117 + 4.A.6.1.16
pfam HRGMv2_1503_30 HRGMv2_1503_30_19 18117 18398 + YajC
TC HRGMv2_1503_30 HRGMv2_1503_30_20 18435 18917 + 4.A.6.1.4
TC HRGMv2_1503_30 HRGMv2_1503_30_21 19008 19808 + 4.A.6.1.4
TC HRGMv2_1503_30 HRGMv2_1503_30_22 19798 20880 + 4.A.6.1.4
TF HRGMv2_1503_30 HRGMv2_1503_30_23 21065 21796 + GntR
STP HRGMv2_1503_30 HRGMv2_1503_30_24 21911 23077 + SIS | SIS
CAZyme HRGMv2_1503_30 HRGMv2_1503_30_25 23195 24364 + CE9
Gene ID: HRGMv2_1503_30_18
Type: TC
Location: 17674 - 18117 (+)
Gene ID: HRGMv2_1503_30_19
Type: pfam
Location: 18117 - 18398 (+)
Gene ID: HRGMv2_1503_30_20
Type: TC
Location: 18435 - 18917 (+)
Gene ID: HRGMv2_1503_30_21
Type: TC
Location: 19008 - 19808 (+)
Gene ID: HRGMv2_1503_30_22
Type: TC
Location: 19798 - 20880 (+)
Gene ID: HRGMv2_1503_30_23
Type: TF
Location: 21065 - 21796 (+)
Gene ID: HRGMv2_1503_30_24
Type: STP
Location: 21911 - 23077 (+)
Gene ID: HRGMv2_1503_30_25
Type: CAZyme
Location: 23195 - 24364 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1503_30_19 vegan > omnivore 1.14488 0.00701

🧭 Explore Read Mapping of CGC

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