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Cluster: HRGMv2_1501_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1501_23 HRGMv2_1501_23_7 4535 5704 - CE9
STP HRGMv2_1501_23 HRGMv2_1501_23_8 5823 6989 - SIS | SIS
TF HRGMv2_1501_23 HRGMv2_1501_23_9 7103 7834 - GntR
TC HRGMv2_1501_23 HRGMv2_1501_23_10 8019 9101 - 4.A.6.1.4
TC HRGMv2_1501_23 HRGMv2_1501_23_11 9091 9891 - 4.A.6.1.4
TC HRGMv2_1501_23 HRGMv2_1501_23_12 9982 10464 - 4.A.6.1.4
pfam HRGMv2_1501_23 HRGMv2_1501_23_13 10501 10782 - YajC
TC HRGMv2_1501_23 HRGMv2_1501_23_14 10782 11225 - 4.A.6.1.16
Gene ID: HRGMv2_1501_23_7
Type: CAZyme
Location: 4535 - 5704 (-)
Gene ID: HRGMv2_1501_23_8
Type: STP
Location: 5823 - 6989 (-)
Gene ID: HRGMv2_1501_23_9
Type: TF
Location: 7103 - 7834 (-)
Gene ID: HRGMv2_1501_23_10
Type: TC
Location: 8019 - 9101 (-)
Gene ID: HRGMv2_1501_23_11
Type: TC
Location: 9091 - 9891 (-)
Gene ID: HRGMv2_1501_23_12
Type: TC
Location: 9982 - 10464 (-)
Gene ID: HRGMv2_1501_23_13
Type: pfam
Location: 10501 - 10782 (-)
Gene ID: HRGMv2_1501_23_14
Type: TC
Location: 10782 - 11225 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1501_23_13 vegan > omnivore 1.11517 0.00455

🧭 Explore Read Mapping of CGC

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