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Cluster: HRGMv2_1501_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1501_10 HRGMv2_1501_10_39 44603 45397 - 3.A.1.34.1
TC HRGMv2_1501_10 HRGMv2_1501_10_40 45390 46313 - 3.A.1.34.1
TC HRGMv2_1501_10 HRGMv2_1501_10_41 46518 47498 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1501_10 HRGMv2_1501_10_42 47658 48443 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1501_10 HRGMv2_1501_10_43 48693 50096 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1501_10 HRGMv2_1501_10_44 50278 50841 - 4.A.1.2.6
peptidase HRGMv2_1501_10 HRGMv2_1501_10_45 51086 51985 + S09.UPW
NULL(UNKNOWN) HRGMv2_1501_10 HRGMv2_1501_10_46 52033 52353 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1501_10 HRGMv2_1501_10_47 52475 54835 + 9.A.8.1.6
TC HRGMv2_1501_10 HRGMv2_1501_10_48 55150 56814 + 4.A.1.1.3
TF HRGMv2_1501_10 HRGMv2_1501_10_49 56877 57629 - HTH_6
CAZyme HRGMv2_1501_10 HRGMv2_1501_10_50 57805 59178 + GH4
NULL(UNKNOWN) HRGMv2_1501_10 HRGMv2_1501_10_51 59344 60096 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1501_10 HRGMv2_1501_10_52 60272 61468 + 2.A.1.2.18
CAZyme HRGMv2_1501_10 HRGMv2_1501_10_53 61651 63027 + GH13_20
Gene ID: HRGMv2_1501_10_39
Type: TC
Location: 44603 - 45397 (-)
Gene ID: HRGMv2_1501_10_40
Type: TC
Location: 45390 - 46313 (-)
Gene ID: HRGMv2_1501_10_41
Type: TC
Location: 46518 - 47498 (-)
Gene ID: HRGMv2_1501_10_42
Type:
Location: 47658 - 48443 (-)
Gene ID: HRGMv2_1501_10_43
Type: pfam
Location: 48693 - 50096 (-)
Gene ID: HRGMv2_1501_10_44
Type: TC
Location: 50278 - 50841 (-)
Gene ID: HRGMv2_1501_10_45
Type: peptidase
Location: 51086 - 51985 (+)
Gene ID: HRGMv2_1501_10_46
Type:
Location: 52033 - 52353 (+)
Gene ID: HRGMv2_1501_10_47
Type: TC
Location: 52475 - 54835 (+)
Gene ID: HRGMv2_1501_10_48
Type: TC
Location: 55150 - 56814 (+)
Gene ID: HRGMv2_1501_10_49
Type: TF
Location: 56877 - 57629 (-)
Gene ID: HRGMv2_1501_10_50
Type: CAZyme
Location: 57805 - 59178 (+)
Gene ID: HRGMv2_1501_10_51
Type:
Location: 59344 - 60096 (+)
Gene ID: HRGMv2_1501_10_52
Type: TC
Location: 60272 - 61468 (+)
Gene ID: HRGMv2_1501_10_53
Type: CAZyme
Location: 61651 - 63027 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1501_10_50 vegan > omnivore 1.54689 0.00455
HRGMv2_1501_10_51 vegan > omnivore 1.76776 0.00455

🧭 Explore Read Mapping of CGC

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