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Cluster: HRGMv2_1500_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1500_17 HRGMv2_1500_17_30 30383 30826 + 4.A.6.1.16
pfam HRGMv2_1500_17 HRGMv2_1500_17_31 30826 31107 + YajC
TC HRGMv2_1500_17 HRGMv2_1500_17_32 31144 31626 + 4.A.6.1.4
TC HRGMv2_1500_17 HRGMv2_1500_17_33 31717 32517 + 4.A.6.1.4
TC HRGMv2_1500_17 HRGMv2_1500_17_34 32507 33589 + 4.A.6.1.4
TF HRGMv2_1500_17 HRGMv2_1500_17_35 33774 34505 + GntR
STP HRGMv2_1500_17 HRGMv2_1500_17_36 34620 35786 + SIS | SIS
CAZyme HRGMv2_1500_17 HRGMv2_1500_17_37 35905 37074 + CE9
Gene ID: HRGMv2_1500_17_30
Type: TC
Location: 30383 - 30826 (+)
Gene ID: HRGMv2_1500_17_31
Type: pfam
Location: 30826 - 31107 (+)
Gene ID: HRGMv2_1500_17_32
Type: TC
Location: 31144 - 31626 (+)
Gene ID: HRGMv2_1500_17_33
Type: TC
Location: 31717 - 32517 (+)
Gene ID: HRGMv2_1500_17_34
Type: TC
Location: 32507 - 33589 (+)
Gene ID: HRGMv2_1500_17_35
Type: TF
Location: 33774 - 34505 (+)
Gene ID: HRGMv2_1500_17_36
Type: STP
Location: 34620 - 35786 (+)
Gene ID: HRGMv2_1500_17_37
Type: CAZyme
Location: 35905 - 37074 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1500_17_31 vegan > omnivore 1.00604 0.00566

🧭 Explore Read Mapping of CGC

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